Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3297 ATGTCGTCACGAACCACCGCCACGACGGAGACGCCTGAGGAGGAGCCTCAGGCACCGCTACTCCGCTCGCGCCACGACGGCGGAGGCCAGCCACCCACACTCGCGCTCCTTCTCGGTCGCGCCGTTGGCCGACGAGGCCCGTCGGTGCTGGTGCGGGAGACAGCGGCGCGCGAGCTCGAGGAGCGGCGCGCCGACTGGGGATACTCGAAGCCGGTGGTGGCGCTTGACATGTCTTGGAACATGGCGTTTGTGGTGGTATCAGCGGCGATGCTTGCCTGCACCGTCGGCGAGCAACCGAACACGCCGATCCGGCTGTGGATTGTCGGCTACGCGCTGCAGTGCCTCTTGCATGTCGTGCTGGTGTGGTTCGAGTACCGGCGTCGGAGCCGGAGGGACTCGAGGCGGCGGCGGAGGCTGGTGGAGAGCGACGCCGGAAGTACTGACGGCAGCGACAGCGATGACGGCGATGCGAACTCGTCTCGCTCCGGATTCACAAAACGATGTGAAACAATAAATACTGGGGTTTCATTCATTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATGCTTATGCAGGATGCCCCACGGTTGTACTGGTTGGCTGTTGTTTTTCTGGCTTTTGATGTATTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGCTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCTGGACAGGAAGGTGCTTCAGAAGCAGATCTTAGTATACTTCCGAAATACAGATTTCAAATACTAAACAATGAGGAAAAGCCTAGTGGTGGAGCCGGATCAATGGTTCCCACAGAAACCAGCAGTGCTTACTTGGCAAATGAAAGAACACTTTTACCTGAGGATGCGGAATGCTGTATATGCCTCTGTTCATATGAGGACGGAGTAGAGCTCCATGCTCTTCCCTGCAATCATCATTTCCATGCTTCATGCATAGTAAAATGGCTAAAGATGAATGCAACTTGTCCCCTTTGCAAGTACAATATTCTCAAGGGAAACGAACAGGTATAA 1062 0.5452 MSSRTTATTETPEEEPQAPLLRSRHDGGGQPPTLALLLGRAVGRRGPSVLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYRRRSRRDSRRRRRLVESDAGSTDGSDSDDGDANSSRSGFTKRCETINTGVSFIWWMVGFYWVVSGGDMLMQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQILNNEEKPSGGAGSMVPTETSSAYLANERTLLPEDAECCICLCSYEDGVELHALPCNHHFHASCIVKWLKMNATCPLCKYNILKGNEQV* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3297 353 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 353 - -
Lja2g3297 353 CDD RING-H2_PA-TM-RING 301 343 - -
Lja2g3297 353 Pfam Ring finger domain 301 343 IPR001841 -
Lja2g3297 353 PANTHER TARGET OF ERK KINASE MPK-1 14 353 - -
Lja2g3297 353 SMART ring_2 302 342 IPR001841 -
Lja2g3297 353 ProSiteProfiles Zinc finger RING-type profile. 302 343 IPR001841 -
Lja2g3297 353 SUPERFAMILY RING/U-box 290 347 - -
Lja2g3297 353 MobiDBLite consensus disorder prediction 141 162 - -
Lja2g3297 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 348 IPR013083 -
Lja2g3297 353 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3297 Lja-Chr2 74113662 74121799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3297 7 352 C3H Transcription Factor Family AT1G68070 66.859 1.53e-174 486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3297 2 74113662 74121799 Lja2g3297 2 74113662 74121799 ECH