Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3295 ATGTCCGCCTTCAACGCTCTCAGATCGTCAAAACTCATCTCGTGGAAACCAACCGGAAGGCTTCAGCAAACCCTAGCACAATGCGTGGAGCGGAAGGGGAAGGGATTGCATTCGGGTGAAGTCTCGACGGTGAGATTGTGCCCTGGATTTGCAGGCCAAGGGAGGCACTTCGATTTCCGGTCCAATTTGATCCCGGCGTCGGTGGAGTTCGCGCAGGTTTCGCCTCTCTGCACCACTCTCTGTAAAGGCGGTTTCCGAGTTCGAACCGTGGAGCACTTGCTTTCTGCTCTGGAGGCTGCTGGTGTTGATAATTGCAGGATTGAGATTGAGACGGAGGATGATCAATGCTGCGATGCTGAGATTCCTATATTTGATGGGTCAGCAAAGGAATGGGTGGAAGCGGTGGAAGAAGTTGGTTTGAAGGTAGCAACTGATATTGATGGGAAAAGCTGTGATAAAATAGCTCCGCATGTGAAGGAACCAGTGTATGTTTGGAGGGATGATTCGTTCGTTGCTGCATTTCCTTCAGAAGTGGTTCAAATCACTTATGGCATCAGCTTTCCACAGGCACCCGCTATTGGCTGCCAGTGGTTTTCAATAACCCCTTTGGATAATGTGGTTTATTCAATGCAAATAGCTTTGTCAAGAACTTTCTGCATTTATGAGGAGGTTGAGCAAATGCGCAGTGCTGGACTTATCAAAGGGGGTTCTCTAGAAAATGCTATTGTGTGCAGTGCGAGTAAAGGTTGGTTGAATCCGCCTCTGCATTTCAGTGATGAACCATGTCGTCACAAGATCTTAGATCTTATTGGTGATCTCTCCCTGTTTGGTCAATTTGGTAATCAAGGACTCCCTGTGGCTCACATCGTAGCTTATAAGGGTGGCCATGCATTGCATGCTGATTTGGCACGCCGCCTTATGGGAATGATGTGA 933 0.4834 MSAFNALRSSKLISWKPTGRLQQTLAQCVERKGKGLHSGEVSTVRLCPGFAGQGRHFDFRSNLIPASVEFAQVSPLCTTLCKGGFRVRTVEHLLSALEAAGVDNCRIEIETEDDQCCDAEIPIFDGSAKEWVEAVEEVGLKVATDIDGKSCDKIAPHVKEPVYVWRDDSFVAAFPSEVVQITYGISFPQAPAIGCQWFSITPLDNVVYSMQIALSRTFCIYEEVEQMRSAGLIKGGSLENAIVCSASKGWLNPPLHFSDEPCRHKILDLIGDLSLFGQFGNQGLPVAHIVAYKGGHALHADLARRLMGMM* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3295 310 Gene3D lpxc deacetylase, domain 2 156 310 IPR011334 GO:0008759|GO:0009245
Lja2g3295 310 TIGRFAM lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 22 306 IPR004463 GO:0008759|GO:0009245
Lja2g3295 310 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 2 308 IPR004463 GO:0008759|GO:0009245
Lja2g3295 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 21 141 IPR020568 -
Lja2g3295 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 307 IPR020568 -
Lja2g3295 310 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 22 307 IPR004463 GO:0008759|GO:0009245
Lja2g3295 310 Gene3D lpxc deacetylase, domain 1 20 146 IPR015870 GO:0008759|GO:0009245
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3295 4 306 Carbohydrate Esterase AT1G25054 65.347 1.02e-145 411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3295 2 74087146 74100663 Lja2g3295 2 74087146 74100663 ECH