Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3293 ATGTTGCATGACATGGACTCAAAGGCCCTGTGCTTCATAACCCACCAAGCAATTTTCGACGCGGTTCGATCTGGGGACCTTGAAAGGCTCAAACAGCTACTGCAACAGGTGAACAAAGGTGAATCTTCAGATGGGTCATCGTCGCTTTCTGAACTCATGTCCATGCAGAACGATGATGGAGAGACCTTGCTGTTTATTGCTGCAGAGCGTGGTTTTCAAGAGGTGTTCAGCTTCTTGCGCAGCTTCTGTGACTTGGAGGTGCTGAAGATTAGGTCCAAACCTGATCTGAACGCCTTTCATGTTGCAGCCAAACAAGGCCATCTGGAAATCGTGAGGGAGATTTTAAGCATTTGGCCTGAGGTTTGTAAATTATGTGACACCTCAAATACTAGCCCCCTTTACTCAGCTGCTGTACAAGACCATTTAGATGTGGTGAATGCTATCTTGGATGTTGATGTCAGTTCAATGATGATTGTGAGGAGAAACGGCAAAACCGCGTTGCACAATGCTGCCAGGTATGGCATGCTTGGTATTGTGAAAGCTCTCATTGCCCGTGATGCCGGAATAGTCTGCATCAAGGATAAAAAAGGTCAAACTGCACTGCATATGGCTGTGAAAGGACATAGTACACCAGTCGTAGAGGAGATATTACAGGCTGACCCTGCTATATTGAATGAACAAGATAAGAAGGGTAATACAGCTCTTCACATGGCTACCAGGAAACTCCGTTCAGAGATAGTGAGCTTTTTATTAAGCTATGCATCTATGAATGTCAATGCCATCAACAATCAGGAGCAAACAGCCATGGATTTGGCAGATAAACTGGCATATGGAAATTCATCTCTGGAGATCCATGAAGCCCTCACAGAACGTGGTGCCAAGCGTGCTAGGCATGTCAGCAAAGTCGATGAAGCCAAGGAACTCAAGAGAGCTGTGAGTGATATAAAGCACGAAGTGCAGTCACAACTTATACAGAATGAGAAAACTCGGAAACGAGTTTCCGGTATTGCTAAGGAATTGAGGAAGATTCACAGGGAGGCAGTTCAAAACACCATTAATTCTGTCACAGTTGTCGCTGTCCTTTTCGCCTCAATAGCGTTCGTGGCTTTGTTCAGTTTGCCAGGTCAATATAGAATGAAACAGTCACGGGCAGGGGAAGCAAACATAGCTGGTGATGTTGCCTTCAGTGCTTTCTGTCTATTGAATGCTACATCTCTTTTTATTTCTTTTTCGGTTGTTGTGGTTCAAATCACTTTGGTAGCTTGGGACACAAGGGCTCAAAGGAAGGTTGTCTCAGTGGTTAACAAGCTAATGTGGACTGCTTGTGCCTGCACTTGTGGTGCTTTTCTGGCTATAGCTTTTGTGGTTGTTGGAAAGGAAACATGGATGGCTATAACTGTAACCCTTTTGGGAGCACCAATCCTAGTTGGGACTCTAGCATACTTGTGCTACTTTGTTTTTCTGCGACATTTCGGATTCCGAAGTATTTCCCAGAGATTAGTCAAGAGAGCAAGTGGAAATATATCATTCTCATGGAATCACTCAGCACATATATCAGATGTGGATGAATGTAACTCTGATCTTCAGAATATGTATGCTCTGTGA 1605 0.443 MLHDMDSKALCFITHQAIFDAVRSGDLERLKQLLQQVNKGESSDGSSSLSELMSMQNDDGETLLFIAAERGFQEVFSFLRSFCDLEVLKIRSKPDLNAFHVAAKQGHLEIVREILSIWPEVCKLCDTSNTSPLYSAAVQDHLDVVNAILDVDVSSMMIVRRNGKTALHNAARYGMLGIVKALIARDAGIVCIKDKKGQTALHMAVKGHSTPVVEEILQADPAILNEQDKKGNTALHMATRKLRSEIVSFLLSYASMNVNAINNQEQTAMDLADKLAYGNSSLEIHEALTERGAKRARHVSKVDEAKELKRAVSDIKHEVQSQLIQNEKTRKRVSGIAKELRKIHREAVQNTINSVTVVAVLFASIAFVALFSLPGQYRMKQSRAGEANIAGDVAFSAFCLLNATSLFISFSVVVVQITLVAWDTRAQRKVVSVVNKLMWTACACTCGAFLAIAFVVVGKETWMAITVTLLGAPILVGTLAYLCYFVFLRHFGFRSISQRLVKRASGNISFSWNHSAHISDVDECNSDLQNMYAL* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3293 534 SMART ANK_2a 59 87 IPR002110 GO:0005515
Lja2g3293 534 SMART ANK_2a 196 226 IPR002110 GO:0005515
Lja2g3293 534 SMART ANK_2a 162 191 IPR002110 GO:0005515
Lja2g3293 534 SMART ANK_2a 230 260 IPR002110 GO:0005515
Lja2g3293 534 SMART ANK_2a 94 123 IPR002110 GO:0005515
Lja2g3293 534 SMART ANK_2a 128 158 IPR002110 GO:0005515
Lja2g3293 534 ProSiteProfiles Ankyrin repeat profile. 230 252 IPR002110 GO:0005515
Lja2g3293 534 Pfam Ankyrin repeats (3 copies) 194 259 IPR002110 GO:0005515
Lja2g3293 534 Pfam Ankyrin repeats (3 copies) 99 187 IPR002110 GO:0005515
Lja2g3293 534 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 4 534 - -
Lja2g3293 534 SUPERFAMILY Ankyrin repeat 17 293 IPR036770 -
Lja2g3293 534 ProSiteProfiles Ankyrin repeat region circular profile. 230 252 - -
Lja2g3293 534 ProSiteProfiles Ankyrin repeat profile. 162 189 IPR002110 GO:0005515
Lja2g3293 534 Gene3D - 4 354 IPR036770 -
Lja2g3293 534 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 4 534 - -
Lja2g3293 534 ProSiteProfiles Ankyrin repeat region circular profile. 162 189 - -
Lja2g3293 534 Pfam Domain of unknown function 346 455 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3293 Lja-Chr2 73869604 73874108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3293 5 534 Miscellaneous Gene Families AT2G01680 65.918 0.0 706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3293 2 73869604 73874108 Lja2g3293 2 73869604 73874108 ECH