Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00124 ATGGACGAAATCGACGTGCCTCCCTTCTTCCTGTGCCCTATTTCCCTCGAACTCATGAAGGACCCCGTAACCGTCTCCACCGGAATCACCTACGACCGCCACAGCATCGAGAAATGGCTCTTCGCCTCAAACAACCACACCTGTCCCGTCACCAAGCAGCCTCTCCTCCCAGACCTCACTCCCAACCACACCCTCCGCCGCCTCATTCAAGCCTGGTGCACCGTCAACGCCTCCCACGGCATCCAACGGATCCCAACGCCCAAGCCTCCCGTCGACAAAACCATCATCCAAAACCTCCTCAAAGACGCCTCCGGCTCCCCCAACCTCCAGCTCCAGTGCCTCCGAACCCTCAAATCCATCGCTTCCGAGTCCCAAACCAACAAACGCTCTATCGAATCCGCAGGCGCCGTTAAATTCCTTGCTTCGGTTATAACCAATACTATAAACTCGTGTTTAGACGATGACGTGGAGCTGGAGTTGAAAACAAGCGTAGCAGATGAAGCATTGAGCTTATTGCATAACATTCAGTTATCCGAACCGGGTTTGAAGACTCTGCTGAGTCACCCCGAGTTTATAAACTCGTTAACGAAGGTTATGCAGAGAGGAATCTACGAGTCACGCGCTTACGCTGTTTTCTTACTGAAGTCGTTGTCAGAAGTGGCGGATCCGGTGCATCTAATTAACCTAAAACCTGAACTGTTTATCGAACTGGTTCAACTCCTGAAGGACCAGATTTCGCAGAAGGGTTCCAAGGCCACGCTTCAGACACTGATTCAGGTGTGTCCGTGGGGGAGGAACAGGGTGAAAGCGGTGGAGGCGGGGGCGGTGCCGGTTATCGTGGAGCTTCTTCTGGAATACAGGGAGAGGAAGCCCTGCGAGATGATGCTCGTTGTGTTGGAGATTCTGTGTCAGAGCGCCGACGGGCGTGCGGAGTTGCTGGCGCACTCGGCGGGGGTGGCGATCGTGGCCAAGAAGATTCTGAGGGTGTCGACGATGGCTAACGACAGGGCGGCAAAGATTCTGCTGTCGGTGTGTAGATTCTCGGCGACGCCCAACGTGGTTCAGGAGATGGTGCAGCTGGGGGTGGTTGCGAAGCTCTGCTTGGTGCTGCAGGTGGATAGCGGGAACAAGGCCAAGGAAAAGGCCAGGGAGATTCTCAAACTGCACGCCAAAGCGTGGAAGAACTCGCCTTGCATACCTGGGCACTTGCTTGCTTCGTACCCAACAACCACTGTATGA 1239 0.548 MDEIDVPPFFLCPISLELMKDPVTVSTGITYDRHSIEKWLFASNNHTCPVTKQPLLPDLTPNHTLRRLIQAWCTVNASHGIQRIPTPKPPVDKTIIQNLLKDASGSPNLQLQCLRTLKSIASESQTNKRSIESAGAVKFLASVITNTINSCLDDDVELELKTSVADEALSLLHNIQLSEPGLKTLLSHPEFINSLTKVMQRGIYESRAYAVFLLKSLSEVADPVHLINLKPELFIELVQLLKDQISQKGSKATLQTLIQVCPWGRNRVKAVEAGAVPVIVELLLEYRERKPCEMMLVVLEILCQSADGRAELLAHSAGVAIVAKKILRVSTMANDRAAKILLSVCRFSATPNVVQEMVQLGVVAKLCLVLQVDSGNKAKEKAREILKLHAKAWKNSPCIPGHLLASYPTTTV* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00124 412 FunFam RING-type E3 ubiquitin transferase 1 82 - -
Lapu7g00124 412 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Lapu7g00124 412 SUPERFAMILY ARM repeat 96 376 IPR016024 -
Lapu7g00124 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Lapu7g00124 412 SUPERFAMILY RING/U-box 3 80 - -
Lapu7g00124 412 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
Lapu7g00124 412 CDD RING-Ubox_PUB 7 55 IPR045210 -
Lapu7g00124 412 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
Lapu7g00124 412 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Lapu7g00124 412 Gene3D - 90 396 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00124 Lapu-Chr7 1361389 1362627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00124 2 408 U-box Gene Family AT2G35930 57.005 2.53e-172 486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00124 7 1361389 1362627 Lapu7g00124 7 1361389 1362627 ECH
Lapu7g00124 7 1361389 1362627 Lapu6g01021 6 10291629 10293192 PCT