Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01076 ATGTCGCATTCCTCCGGCGTCGACGCCCTCGCCGATCGCTTCCGCCACGCGCTCAGCTGCAACAACGACACCGCTAACATTAACAAGCCCGACTTCCGAGAACTCGATCTGGGCTCCCCAGTCTCGCCATTGCGCACCACGCGCGCCCCCGCCGCGAGTACCAGCTCAAGCTCATCTGGGTCCTTCTCGGGCCGAACCGGGTCCAACCCGGGCCCTCGAAAGCCCGAATCTTCGCACACCAATAGTAACACTAACAACAGCAGCACCAACAACAACAACTCCGGCGAGCTTTCTGGTTCGAGTGAAAACAGCCCCACCGCGCGAGGGTACAAACCGGGTCACACGAGATCCGACTCAGGATCCACGCCTGCGCCGCTGATATACTCCGGCCAGACTGCAACTTCACCGGCGATGAATGTTCTCCCCACCGGGAACATCTGCCCCTCCGGGAAGATCTTGAAGACGGGGATGGGGATGGTGGCGAATCGGAGTAGTAGAACCGATGTTTTGGGGTCCGGCATGGGGAACTACGGCCATGGGAGCATAATGCGCGGCGGCGGGAAGGCGGAGCCTGTGAGCTCACGCGGGGTTAGCGGCAATGAGGCAGTGAAGAGAGGTGGGCCCGTACAAAGTGTGGATCCGGAGGAGTTGAAGAGATTGGGGAATGAGTGTTATAAAAGGGGGAACTTTGCTGATGCGTTGAGTCTTTATGATCGCGCGATTGCGATGTCGCCGGCGAGTGTCGCTTACCGGAGCAACCGCGCTGCGGCGCTGACCGGGCTGGGACGTTTGGGTGAGGCTGTGAGGGAATGTGAGGAGGCTTTGAGGTTGGATCCTAATTATGGAAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTCAGGTTAGGACAAGTTGAGAATGCTAGGAAACACCTTTGTTACCACGGGATGCAGCCAGATCCATCTGAGATGCAGAGGTTGCAAGTGGTGGAAAAGCATATCAGCAAATGTGGGGATGTAAGGAGGATAGGGGATTGGAAGAGTGTTCTCAGGGAGGTCGATGCTGCTGTTGCTGCTGGAGCGGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCGTTTTTGAAGCTCCACCAGATTGATGATGCAGAAACAGTTTTGTTCCATATTCCTAAATCAGAGTTGCACACTAGTTCCTCTTCTCTGGCAAGATTTTTTGGGATGCTTTCTGAGGCCTATTTCTATTTTGTCAGGGCACAGATTGAGATGGCATTGGGAAGGTTCGAGTATGCGGTTACAGCTGCTGAGAAAGCCAGTCAGATTGATCCCCGGAGTGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTGGCAAGGGCTCGAGTGCGCGGCAATGATCTTTTTAAGTCTGAAAGGTACACAGAAGCTTGCTCCGCGTATGGGGAAGGTTTGAGACTGGATCCTTCGAATTCTGTACTGTATTGCAACAGAGCAGCTTGTTGGTTTAAGCTTGGCCAATGGGAAAGATCAATTGAAGACTCCAACCAAGCTTTACATATCCAACCAAATTACACCAAGGCCCTTCTTCGAAGGGCTGCATCAAACAGCAAGCTAGAACGGTGGGAGGAAGCCGTCAAAGATTATGAGGTCTTGCGGAGAGAACTGCCAAATGATAGCGAAGTTGCTGAATCTCTTTTCCATGCACAAGTTGCCCTAAAGAAATCACGTGGGGAAGAAGTATATAATTTAAAATTTGGTGGCGAAGTAGAAGAAGTATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTCTGTCTGTTGTCCATTTTGAAGTTGCATCTAACTCACAATGCAAACAAATATCACCATTTGTCGATACACTGTGTGGTCGATATCCATCTATTAACTTCCTCAAGGTGGACGTTCAAGAAAGCCCAACAGTTGCAACTGCAGAGAACGTTAGAATTGTACCAACCTTCAAGATATACAAAAATGGCAGCCGAGTGAAGGAAATTGTTTGCCCTAGTCGTGACATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2061 0.5099 MSHSSGVDALADRFRHALSCNNDTANINKPDFRELDLGSPVSPLRTTRAPAASTSSSSSGSFSGRTGSNPGPRKPESSHTNSNTNNSSTNNNNSGELSGSSENSPTARGYKPGHTRSDSGSTPAPLIYSGQTATSPAMNVLPTGNICPSGKILKTGMGMVANRSSRTDVLGSGMGNYGHGSIMRGGGKAEPVSSRGVSGNEAVKRGGPVQSVDPEELKRLGNECYKRGNFADALSLYDRAIAMSPASVAYRSNRAAALTGLGRLGEAVRECEEALRLDPNYGRAHQRLASLFLRLGQVENARKHLCYHGMQPDPSEMQRLQVVEKHISKCGDVRRIGDWKSVLREVDAAVAAGADSSPQLFMCRAEAFLKLHQIDDAETVLFHIPKSELHTSSSSLARFFGMLSEAYFYFVRAQIEMALGRFEYAVTAAEKASQIDPRSVEVAVLLNNVRMVARARVRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALHIQPNYTKALLRRAASNSKLERWEEAVKDYEVLRRELPNDSEVAESLFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLPGLSVVHFEVASNSQCKQISPFVDTLCGRYPSINFLKVDVQESPTVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01076 686 ProSiteProfiles TPR repeat profile. 406 439 IPR019734 GO:0005515
Lapu5g01076 686 ProSiteProfiles TPR repeat profile. 214 247 IPR019734 GO:0005515
Lapu5g01076 686 FunFam TPR repeat-containing thioredoxin TTL4 578 685 - -
Lapu5g01076 686 Gene3D Tetratricopeptide repeat domain 212 572 IPR011990 GO:0005515
Lapu5g01076 686 Pfam Tetratricopeptide repeat 408 437 IPR019734 GO:0005515
Lapu5g01076 686 MobiDBLite consensus disorder prediction 22 130 - -
Lapu5g01076 686 Pfam Tetratricopeptide repeat 220 280 - -
Lapu5g01076 686 SUPERFAMILY Thioredoxin-like 489 684 IPR036249 -
Lapu5g01076 686 SMART tpr_5 248 281 IPR019734 GO:0005515
Lapu5g01076 686 SMART tpr_5 214 247 IPR019734 GO:0005515
Lapu5g01076 686 SMART tpr_5 486 519 IPR019734 GO:0005515
Lapu5g01076 686 SMART tpr_5 452 485 IPR019734 GO:0005515
Lapu5g01076 686 SMART tpr_5 406 439 IPR019734 GO:0005515
Lapu5g01076 686 SMART tpr_5 520 553 IPR019734 GO:0005515
Lapu5g01076 686 SUPERFAMILY TPR-like 212 565 IPR011990 GO:0005515
Lapu5g01076 686 CDD TRX_family 591 678 - -
Lapu5g01076 686 Gene3D Glutaredoxin 579 685 - -
Lapu5g01076 686 MobiDBLite consensus disorder prediction 181 215 - -
Lapu5g01076 686 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Lapu5g01076 686 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 683 IPR044534 -
Lapu5g01076 686 MobiDBLite consensus disorder prediction 46 130 - -
Lapu5g01076 686 Pfam Thioredoxin 591 677 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01076 Lapu-Chr5 21815043 21819324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01076 228 563 Glycosyltransferase AT3G04240 21.765 6.25e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01076 5 21815043 21819324 Lapu5g01076 5 21815043 21819324 ECH