Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00802 ATGATGGCTACCCGTAACATTGAAAAGATGGCCTCCATTGATGCTCAGTTGAGGTTGCTGGCACCCCGCAAGGTCTCTGATGATGACAAACTGGTTGAGTATGATGCTCTTTTGTTGGACCGTTTCCTTGACATTCTTCAGGATTTGCATGGTGAAGATATCAGACAAACGGTTCAAGATTGTTATGAGCTGTCAGCTGAGTACGAAGGGGAGCATCGACCTGAAAAGTTGGAGGAACTTGGGAATATGCTGACTGGTCTTGATGCTGGGGATTCAATTGTTATTGCCAAATCATTTTCTCACATGCTCAATTTGGCCAACTTGGCAGAAGAAGTTCAAATTGCGTACCGAAGAAGGATTAAATTATTGAAGAAGGGTGATTTTGCGGATGAGAACTCTGCCACGACTGAGTCAGACATTGAAGAGACCTTGAAGAGGCTCGTGACTCAACTGAAGAAGACCCCCCAGGAAGTCTTTGATGCTCTGAAGAACCAAACTGTGGATTTGGTCCTAACTGCTCATCCTACTCAGTCTGTTCGTAGATCTTTGCTGCAAAAGCATGGAAGGATAAGGAATTGTTTGACACAATTATATGCCAAAGACATAACTCCAGATGATAAGCAGGAACTTGACGAGGCATTACAAAGAGAGATTCAAGCAGCATTTCGCACAGATGAAATTCGAAGGACTCCTCCTACACCACAAGATGAGATGAGGGCAGGAATGAGCTACTTTCATGAGACAATTTGGAAAGGTGTACCAAAGTTTCTGCGCCGGGTTGATACAGCTCTGAAGAACATTGGAATAAATGAACGTGTCCCTTATAATGCTCCTGTTATTCAGTTCTCATCTTGGATGGGAGGAGATCGTGATGGTAATCCAAGAGTAACCCCTGAAGTTACAAGGGATGTGTGTTTGCTGGCTAGAATGATGGCTGCTAATATGTACTTCTCTCAGATAGAGGATCTCATGTTTGAGTTGTCTATGTGGCGTTGCACTGACGAGCTTCGAATTCGTGCTCATGAACTCCATAGGTCCTCAAAGAGAGATGCAAAACATTACATAGAGTTTTGGAAACAGATTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCAGAGACAAACTGTATAACACACGTGAACGTGCTCGCCAGTTATTAGCCAATGGGACATCTGATATCCCAGAGGAGACAACCTTCACTAATGTTGAGCAGTTCCTGGAGCCTCTTGAACTATGCTATAGGTCACTCTGTGCATGTGGTGACAGACCAATAGCAGATGGAAGCCTCCTTGATTTCCTGCGGCAAGTTTCCACATTTGGACTCTCACTTGTGAGGCTTGACATCCGTCAAGAGTCAGATAGGCACACTGATGTTATGGATGCTATCACAAAACACTTGGAAATTGGATCATACCGAGAGTGGCCTGAGGAAAAGAGGCAGGAGTGGCTCTTGTCTGAACTCAGTGGAAAACGCCCTCTCTTTGGCCATGACCTTCCCAAAACAGAAGAAATCACTGATGTTTTGGAAACCTTCCATGTCATTTCAGAGCTACCTAAAGACAACTTTGGTGCCTACATCATATCAATGGCCACAGCCCCATCTGATGTGCTTGCTGTTGAGCTCTTACAACGTGAGTGCCATGTGAAGGAGCCACTAAGGGTGGTGCCACTGTTTGAAAAGCTTGCTGATCTTGAGTCTGCTCCGGCTTCTGTGGCGCGACTTTTCTCCGTAGATTGGTACAGAGACCGCATCAATGGGAAGCAAGAAGTTATGATAGGGTACTCAGACTCGGGAAAAGATGCTGGCCGTCTTTCAGCTGCTTGGGCGCTTTACAAGGCTCAAGAGGAACTTGTCAAGGTTGCTAAGGAGTTTGGTGTGAAGCTTACAATGTTTCATGGGAGAGGAGGAACTGTTGGAAGAGGAGGAGGACCAACTCATCTTGCTATTTTGTCTCAGCCACCAGACACCATTCATGGCTCACTTCGGGTAACGGTTCAGGGTGAAGTCATTGAACAGTCTTTTGGAGAGGAGCATTTGTGCTTTAGGACACTTCAAAGGTTCACTGCTGCTACACTTGAGCATGGCATGCACCCTCCTGTGTCACCAAAACCGGCATGGCGCGCCCTCATGGATGAGATGGCTGTCATTGCTACTCAGGAGTATCGCTCTGTTGTTTTCAAAGAGCCTCGTTTTGTTGAATATTTCAGACGTGCAACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCCAAGCGAAAGCCAAGCGGAGGAATTGAATCGCTACGTGCTATTCCTTGGATTTTTGCATGGACACAAACAAGGTTTCATTTGCCAGTGTGGCTTGGTTTTGGGGCAGCATTTAAGCATGTTGTTGAGAAAGATCCGAAGAATCTGCAAATGCTTCAGGATATGTACAACCAATGGCCTTTCTTCAGGGTCACCCTTGACTTGGTTGAGATGGTGTTTGCCAAGGGAGACCCTGGGATTGCAGCCCTATTTGACAAACTCCTAGTGTCAGAAGAGCTACGTCCATTTGGAGAGAGCTTACGAGCTAAATATGAAGAAACCAAGAGCTTTCTCCTCCAGGTTGCTGGGCACAAGGATCTTCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTCGACTTCGTGACTCATACATCACAACCCTGAATGTGTTGCAAGCCTACACATTGAAGAGAATCCGTGATCCTGACTACCATGTAAAGTTGAGGCCACACTTGTCAAAGGACTACATGGAATCAAGCAAGCCAGCAGCAGAGCTTGTTAAACTTAACCCCAAAAGCGAGTATGCACCTGGCCTTGAAGACACCCTTATTTTGACAATGAAGGGTATTGCTGCTGGCATGCAAAATACTGGTTAA 2904 0.4576 MMATRNIEKMASIDAQLRLLAPRKVSDDDKLVEYDALLLDRFLDILQDLHGEDIRQTVQDCYELSAEYEGEHRPEKLEELGNMLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSATTESDIEETLKRLVTQLKKTPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFELSMWRCTDELRIRAHELHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGTSDIPEETTFTNVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLEIGSYREWPEEKRQEWLLSELSGKRPLFGHDLPKTEEITDVLETFHVISELPKDNFGAYIISMATAPSDVLAVELLQRECHVKEPLRVVPLFEKLADLESAPASVARLFSVDWYRDRINGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELVKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPAWRALMDEMAVIATQEYRSVVFKEPRFVEYFRRATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVVEKDPKNLQMLQDMYNQWPFFRVTLDLVEMVFAKGDPGIAALFDKLLVSEELRPFGESLRAKYEETKSFLLQVAGHKDLLEGDPYLKQRLRLRDSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDYMESSKPAAELVKLNPKSEYAPGLEDTLILTMKGIAAGMQNTG* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00802 967 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 593 605 IPR033129 -
Lapu5g00802 967 PRINTS Phosphoenolpyruvate carboxylase signature 442 462 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g00802 967 PRINTS Phosphoenolpyruvate carboxylase signature 222 238 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g00802 967 PRINTS Phosphoenolpyruvate carboxylase signature 765 791 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g00802 967 PRINTS Phosphoenolpyruvate carboxylase signature 591 611 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g00802 967 PRINTS Phosphoenolpyruvate carboxylase signature 169 182 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g00802 967 PRINTS Phosphoenolpyruvate carboxylase signature 282 297 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g00802 967 PRINTS Phosphoenolpyruvate carboxylase signature 633 662 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g00802 967 Pfam Phosphoenolpyruvate carboxylase 37 967 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g00802 967 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 170 181 IPR018129 -
Lapu5g00802 967 Hamap Phosphoenolpyruvate carboxylase [ppc]. 24 967 IPR022805 GO:0006099|GO:0008964|GO:0015977
Lapu5g00802 967 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 5 967 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g00802 967 Gene3D Phosphoenolpyruvate/pyruvate domain 310 445 - -
Lapu5g00802 967 FunFam Phosphoenolpyruvate carboxylase 1 310 445 - -
Lapu5g00802 967 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 34 967 IPR015813 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00802 Lapu-Chr5 8105004 8110805 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00802 5 8105004 8110805 Lapu5g00802 5 8105004 8110805 ECH
Lapu5g01084 5 21907118 21913207 Lapu5g00802 5 8105004 8110805 PCT