LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g03893	ATGGTGAAATCCAACGAAAATGGTTCTGCTTCGGTGCCTCCCTTCTTGAAAAAATGTTACGATATGGTGGAAGACCGGAACACGGACTCCGTTATCCGTTGGAGCGACGGCGGAGACAGTTTCCTCATCTCCGACACCACTCAATTCTCCGTCACGCTACTTCCTACCTATTTCAAACACAACAATTTCTCCAGTTTTATTAGACAACTCAATATTTATGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAAAACTTTGTTAGGAGTCAAAAACAATTGCTGAAGAATATACGCAGAAGGAAACATCCACACATTGCAGATCAGCAAAAAGCATTGCCTCATAATGACAACTGTGATGTACCATCGGAAGAGGCACCACATCATGGCCTTTGGAAAGAAGTTGAGAATCTCAAATCTGATAAAAATTCTCTGACCCAGGAGTTGGTCAAACTCAGGCAACACCAGGAATCTGCTGACAATAAGTTGCTGCTCCTGAGTGATAGTCTTCAAGGAATGGAAAAGCATCAGCAACAGATGTTATCATTCTTAGTCATGGTCGTGCAAAGCCCTGGGTTCCTGGTTCAACTGCTTCATCCAAAGGAAAACAATTGGCGGTTGTCTGAATCGTGGAATATATTAGATCAAGATAAACAAGATGACAAGCCAATTGCTCCTGATGGGGTGATAATAAAGTATAAGCCACCTGTAGGTGAAAAACTAAAGCCTGTAGTTCCTCTATCTCCTGTTTTCGAAAAACAAGCAGAACCTGAGCTCGCTGCAGATGGGCTGAATGACTTGTGCATAAGTTCTGAATTCATGAAAGTGCTTCTGGATGAAAAATTGTGTCCATTAGAAAACCATTCTCCATTTCTCCTACCTGATTTACCTGATGACGGTTTATGGGAGCAGCTTTTTTTAGGCAGTTCTTTCCTGGGAAACATTGAAGATTCTAATAAAGAAAGTGGGAGGCGCACCGATAGTGAAATGGAAATGGAACCGACTCCAAATGATAATTCTCAAACTGTTGAATCGATGATTGTAGAGATGGAAAAAACTCGAGAATGA	1077	0.415	MVKSNENGSASVPPFLKKCYDMVEDRNTDSVIRWSDGGDSFLISDTTQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRSQKQLLKNIRRRKHPHIADQQKALPHNDNCDVPSEEAPHHGLWKEVENLKSDKNSLTQELVKLRQHQESADNKLLLLSDSLQGMEKHQQQMLSFLVMVVQSPGFLVQLLHPKENNWRLSESWNILDQDKQDDKPIAPDGVIIKYKPPVGEKLKPVVPLSPVFEKQAEPELAADGLNDLCISSEFMKVLLDEKLCPLENHSPFLLPDLPDDGLWEQLFLGSSFLGNIEDSNKESGRRTDSEMEMEPTPNDNSQTVESMIVEMEKTRE*	359

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g03893	358	MobiDBLite	consensus disorder prediction	321	335	-	-
	Lapu3g03893	358	ProSitePatterns	HSF-type DNA-binding domain signature.	54	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu3g03893	358	PRINTS	Heat shock factor (HSF) domain signature	15	38	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu3g03893	358	PRINTS	Heat shock factor (HSF) domain signature	53	65	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu3g03893	358	PRINTS	Heat shock factor (HSF) domain signature	66	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu3g03893	358	SMART	hsfneu3	11	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu3g03893	358	SUPERFAMILY	"Winged helix" DNA-binding domain	11	104	IPR036390	-
	Lapu3g03893	358	Coils	Coil	138	165	-	-
	Lapu3g03893	358	FunFam	Heat stress transcription factor B-4	7	105	-	-
	Lapu3g03893	358	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	7	225	IPR027725	-
	Lapu3g03893	358	MobiDBLite	consensus disorder prediction	336	350	-	-
	Lapu3g03893	358	MobiDBLite	consensus disorder prediction	319	358	-	-
	Lapu3g03893	358	Pfam	HSF-type DNA-binding	15	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu3g03893	358	Gene3D	-	7	105	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g03893	Lapu-Chr3	62453334	62456652	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g03893	12	312	HSF	AT1G67970	48.684	3.04e-89	271

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Lapu3g03893		HSF_DNA-bind	6.5e-31	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu3g03893	3	62453334	62456652	Lapu3g03893	3	62453334	62456652	ECH