Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03877 ATGTCATCGCCAAACTCCGCTCCTCAGCCCCACGCGCCGCTCCTTCTCCCGCGCACCGATGCCACCGCGGCCCGTCTCCCCGTCCTCGCGCTCCTCCTTGGCCGCCGTGGCCACTCCGCCGTCGTCCGGGAGACGGCGGCCCGCGAGCTCGAGGAGCGCCGTGCCGACTGGACATACTCGAAGCCGGTGGTGGCGCTCGACATGACGTGGAACATGGCCTTCGTGGTGGTCTCCGCGGTGATGCTCGCCTGCACGGTCAAGGAGAAGCCCAACACGCCGATCCGATGGTGGATCTGTGGCTACGCGCTGCAGTGCCTCGTCCACGTTGCGCTCGTGTGGTTCGAGTACCGGAGGAGGAGCGACGCTCCCCGGGACGAGGAATCTGGCGGTCACCTCGAATACGATGACGTCAACGACAGCGACGAGGACGATATTGGAACCTCCGGGAGTTCCTCTTCCACTGGATTTACAAAACGATGTGCATCATTGAATACCATGATTTCGTTACTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATTCTTCTGCAAGATGCTCCACGTTTGTACTGGTTGGGTGTTGTCTTTCTTGCATTTGATGTCTTCTTTGCTATCTTTTGTGTTGTGTTGGCGTGCTTGATTGGAATTGCCCTCTGTTGTTGTTTACCCTGTATCATTGCTATTCTCTATGCTGTCGCAGGACAGGAGGGTGCATCAGAATCGGATCTCAGTGTACTTCAGAAATACAGATTTCAAATGTTAAGTAGTGAGGAAACACCTAGTGAGGGAGGTGGATCAATGATTCCTGTGGAGACCATCGATGGTTACTCTGTGAATGAACGAGTACTTTCACCTGATGATGCGGAATGCTGTATATGCATCTCGTCTTATGAGGATGGAGCAGAACTTCATGTTCTTCCATGTAACCATCATTTCCATTCTACATGCATAGTGAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTTCAATATTCTGAAGGGAAATGAACAGATAATATTAAGACATTAA 1050 0.5219 MSSPNSAPQPHAPLLLPRTDATAARLPVLALLLGRRGHSAVVRETAARELEERRADWTYSKPVVALDMTWNMAFVVVSAVMLACTVKEKPNTPIRWWICGYALQCLVHVALVWFEYRRRSDAPRDEESGGHLEYDDVNDSDEDDIGTSGSSSSTGFTKRCASLNTMISLLWWMVGFYWVVSGGDILLQDAPRLYWLGVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASESDLSVLQKYRFQMLSSEETPSEGGGSMIPVETIDGYSVNERVLSPDDAECCICISSYEDGAELHVLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQIILRH* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03877 349 CDD RING-H2_PA-TM-RING 293 335 - -
Lapu3g03877 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 340 IPR013083 -
Lapu3g03877 349 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Lapu3g03877 349 Pfam Ring finger domain 293 335 IPR001841 -
Lapu3g03877 349 SUPERFAMILY RING/U-box 284 339 - -
Lapu3g03877 349 PANTHER TARGET OF ERK KINASE MPK-1 34 343 - -
Lapu3g03877 349 MobiDBLite consensus disorder prediction 122 156 - -
Lapu3g03877 349 SMART ring_2 294 334 IPR001841 -
Lapu3g03877 349 FunFam E3 ubiquitin protein ligase RIE1 274 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03877 Lapu-Chr3 62301786 62306171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03877 1 344 C3H Transcription Factor Family AT1G68070 66.857 1.84e-164 461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03877 3 62301786 62306171 Lapu3g03877 3 62301786 62306171 ECH