Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03871 ATGGCCACTTCGAAGACGGTGATGAGTTCGCTGACCCACTTGCGTCCGCTAACATGCGCCGCATCTGCATCTGCATCTGCATCGGCTTCACGATTAGTGCCCCACCCACCCAACCTCGTAAAGTGGGTAACCAGAGAGGGTGGGTTCGTGCACCGCGCGGTGGAGATAACACAACTCGATGCATCCAACGGACTGGGCCTAGTGGCCAAGGAGCAAATTCCACGTGGCACTGACCTAATTGTCCTCCCGCACCACCTTCCCCTGCGCTTTACCACTCTCGAACACGACCCTGTGCTTCATCGCTTGGCGAGCCAAATCCCTGAGGAACTATGGGCAATGAAACTGGGTCTGAAGCTTCTGCAAGAGAGGGCAAAAGTTGGGTCGTTCTGGTGGCCATACATAAGTAATCTCCCTGAAACATACACCCTGCCTATTTTCTTTCCTGGGGAGGACATAAAGAACTTGCACTATGCTCCTCTTCTTCATCAGGTAAACAAAAGATGTCGGTTTCTTCTTGACTTTGAGCAAGAAGTCAAGCGTGCCTTAGTAAGTGTTAAGCCAGATAGCCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGAGCATTCAGGTTGTATGGTGAAAAGGATCATGATGGGCACCGCATTCACATTCCCATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAAGAAGATACCAGTAGCATGAAGATGCAAGTGAAGGTTGTGGCTGAGACGGCAATACAAAAAGATGACCCTCTGTTACTTTGCTATGGCTGTTTAAACAACGATTTTTTCCTTCTTGATTATGGATTTGTGATGCCCTCTAACCCTTTTGATTGTATTGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCGCAGCAGCTGGAGTTTCTTCACCAAATTTCTCAGCCCCTGCTCCGTGGCAAGAACTGATTTTATCTCAGTTGAATCTATCTGGAGAAACTCCAGATCTCAAGGTGAGCATAGGTGGTCAAGAAACAGTAGAGGGCCGCTTGGTGGCTGCATTGCGTGTAGTCCTTTCAAGTAATATGGAAGCTGTGCGGAAGTATGACCTCGGTATACTCCAGTCTTTAGATGCTGAGGCTCCTCTTGGCGTTGCAAATGACATAGCTGTATTTCGCACCCTAATTGCTTTGTGTGTCATTGCGCTGGGACACTTTCCTACCAAAATAATGGATGATGAATCACTGTTGAAGCAGGGTGCTTCAGGTTCAACCGAGTTAGCCATTCAGTATAGAATCCAAAAGAAATACGTGATTATAGACGTAATGAAAAATCTCTCAAGGAGGGCAAAGCTTCTATCATCAAAGGAAACAGCAACCGCTGAAGGCTAA 1431 0.4689 MATSKTVMSSLTHLRPLTCAASASASASASRLVPHPPNLVKWVTREGGFVHRAVEITQLDASNGLGLVAKEQIPRGTDLIVLPHHLPLRFTTLEHDPVLHRLASQIPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYTLPIFFPGEDIKNLHYAPLLHQVNKRCRFLLDFEQEVKRALVSVKPDSHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDHDGHRIHIPMMLPLIDMCNHSFNPNARIVQEEDTSSMKMQVKVVAETAIQKDDPLLLCYGCLNNDFFLLDYGFVMPSNPFDCIELKYDGALLDAASAAAGVSSPNFSAPAPWQELILSQLNLSGETPDLKVSIGGQETVEGRLVAALRVVLSSNMEAVRKYDLGILQSLDAEAPLGVANDIAVFRTLIALCVIALGHFPTKIMDDESLLKQGASGSTELAIQYRIQKKYVIIDVMKNLSRRAKLLSSKETATAEG* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03871 476 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 291 470 IPR036464 -
Lapu3g03871 476 SUPERFAMILY SET domain 34 299 IPR046341 -
Lapu3g03871 476 Gene3D set domain protein methyltransferase, domain 1 3 294 - -
Lapu3g03871 476 Pfam Rubisco LSMT substrate-binding 330 451 IPR015353 -
Lapu3g03871 476 Gene3D - 334 471 IPR036464 -
Lapu3g03871 476 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 37 441 - -
Lapu3g03871 476 FunFam Histone-lysine N-methyltransferase setd3 3 294 - -
Lapu3g03871 476 SMART set_7 52 287 IPR001214 GO:0005515
Lapu3g03871 476 Pfam SET domain 64 281 IPR001214 GO:0005515
Lapu3g03871 476 FunFam SET domain containing protein 317 470 - -
Lapu3g03871 476 CDD SET_LSMT 53 295 - -
Lapu3g03871 476 ProSiteProfiles SET domain profile. 52 281 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03871 Lapu-Chr3 62255832 62258844 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lapu3g03871 SET 5.9e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03871 3 62255832 62258844 Lapu3g03871 3 62255832 62258844 ECH