Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03860 ATGGAGAGAGATTTCATGGGTCTCAACTCGAAAGAACCACTGGCTGCGGTGAAGGAGGAGATCAAAGATGATGGCTACGAACACTCTGGCTTCACAAAGGGTTCAATTGCACAGTGGCCTTTCTCGAACAAAGTATCCGCCCTTCCTCATTTGATGTCTTTCAAGGCTTCTCAAGATGATAAGACTAAGAAGATAATATCTGGTCCCGTAACAGCTGGGCTTTTATCTATTTTAAGTCAAGATGCTATTGAGTCTAATCAGAAACGCTCAGTCGGTGAACCCCAGAAATCTTTCAATTACGAAGGGCAAGGTGGTCATCATTTTCCGCTGAATCCATATCCAGTACAACATAATGTGAATTCTGTGAATCGTCCTCATGATGTGAAGATGTTTTCAGTTCCCAATCAAGCAGTTTCAGTTTCCTTGGGGAATCCATTCCTGAAGAATCATTTTGCAACTGCTGGTCAGAATATGAATGGCACTAGTATGAAGCAGCCATTACTTGGGGGAATACCTGTCTCTGTGCCCCATTCAGTTATTCCCAACGCTGGTGCTGTTGCTGGAATGATTGAATCATGTGTGAAACCATCTCCACCTTCCGCCCAACTTACCATCTTCTATGCGGGAACTGTCAAAGTCTTTGATGATATCTCTGCTGAAAAGGCTCAAGCCATCATGTTGTTGGCTGGAAGTAGCTTATCTGTAGCTCCTAACATGGTCCAGCCGAATGTTCACGGGCCTGTCCCGAAGTTGGCTGCTGGCGATGGTTTGCCTGCAAGTCAATCTGCAAATACACCACCCGGCTCTGGCCTCTCAAGCCCTTTATCTGTTTCTTCACATACTGGAGCACAGTCAGGGAGTGGCTCAACCAGCACTGATGAATTTCTTGCTGCTAAAACAACTGGAGTTCCCTCCAATCCTGTTAGCAACGTGGAGCCTCCAAAGGTAGTCAGTGCAACCACTATGTTGTCATCAGCTGTACCTCAGGCTCGGAAAGCATCCTTGGCTCGATTTTTAGAAAAGCGCAAAGAAAGGGTGATGAGTGCAGCACCATATAACCTGAGCAAGAAGTCTGAAGAGTGTGTCACTGCAGAATACGCTGGTGCTATATTTTCTGCAGGTGCTGCGACTAACACTGCCTCGGCAATGCAAGGATAG 1158 0.4629 MERDFMGLNSKEPLAAVKEEIKDDGYEHSGFTKGSIAQWPFSNKVSALPHLMSFKASQDDKTKKIISGPVTAGLLSILSQDAIESNQKRSVGEPQKSFNYEGQGGHHFPLNPYPVQHNVNSVNRPHDVKMFSVPNQAVSVSLGNPFLKNHFATAGQNMNGTSMKQPLLGGIPVSVPHSVIPNAGAVAGMIESCVKPSPPSAQLTIFYAGTVKVFDDISAEKAQAIMLLAGSSLSVAPNMVQPNVHGPVPKLAAGDGLPASQSANTPPGSGLSSPLSVSSHTGAQSGSGSTSTDEFLAAKTTGVPSNPVSNVEPPKVVSATTMLSSAVPQARKASLARFLEKRKERVMSAAPYNLSKKSEECVTAEYAGAIFSAGAATNTASAMQG* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03860 385 MobiDBLite consensus disorder prediction 246 293 - -
Lapu3g03860 385 SMART tify_2 196 231 IPR010399 -
Lapu3g03860 385 ProSiteProfiles Tify domain profile. 196 231 IPR010399 -
Lapu3g03860 385 MobiDBLite consensus disorder prediction 258 293 - -
Lapu3g03860 385 Pfam Jas motif 328 352 IPR018467 -
Lapu3g03860 385 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 127 360 IPR040390 -
Lapu3g03860 385 Pfam tify domain 197 230 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03860 Lapu-Chr3 62170863 62174948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03860 39 361 Tify Gene Family AT3G17860 36.364 3.36e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lapu3g03860 tify 5.7e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03860 3 62170863 62174948 Lapu3g03860 3 62170863 62174948 ECH