Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01724 ATGATTGGAGGCAAAGATCTTGTTCCCAATGGCGTAGACACCGAGGGAGAGAACTCAAGGAGCAAGGTGCAGCTGCAGAAGCAGCAGCATCGTGATTTTTCTCAGGGCAAGGAACACCCACAAGAGAAAAAACAGAGTTACGCAGAGAAGAAGAAGGTTGGTGTTGACGAGTTTCAGTCAGCGCCCACAAAAGTTGCCTCTTCTGGGCTGCAAGAGTTGACCCTCAGCTACCTCTGTGACAACCCAAAATTGAGTCTTGTTGAGAGAGAGATTGGTGGCAGAAGCTTGGTGAAGGGCAAAGAAGTTGTTGTTTATGGGAATTCAGATCAAGATCAAGACGAGTTAAGGTTTAAATCGTCTTTAGAAGAGGTGTCCGCATTTAGTGCGCGACAATACTTCGAACAGGATTGTCTTCGGAGGAAGGTTGCTGTCGGGAACCAAAAGCAAGATCAAGATGAGAAGTGGGTAGAGAGGGATTTCTTGAGTTTGAGTGAGTCAAGGGAGAATTCTTCGAAGAGATCCATTGAGGAAGAGTCTGAGAGGGAGAAGATTGGTGGCAGCAAGAAGCAGAAGCTCGAGACTCTTAGTCTCTCTCTTGCTTTGCCTGATGTGTCGCTCTCTCTCACAGCGTCAAACGCTTTGCAAAACGGTGACCAACTTGTTAAGCCAAAGCCTGGTATGCCATCAACAAGGCCCACAACTACGATCAATTCATGTTCAAATGATTACACTGCAGCTTCTTTGTCTCAGTCTTATTCTCACCCTTTCTCACACAACCCAAGTTGCTCAATCACCCGAAATTCAACCGACAATTTTGAGTATTCACACAGCAAAGATGATCAGATTTGGCATTGTGGGGAGGGGACTAATGGGTCAGTTCATAGCAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGGCCAATCATTCCTTTATGCAAGGGAACAGTCACTATAAGGCAACTAGCTCAGATAACCAGTCCTTTTTCCCTTCAGAATTGCCGGCAAGAGTGAGATTCGAAGCTCAGTCTGAGGGCTCAAGGGGAAAGACTTCTGAGAATCTGAGAGGCTTGGAAGGTTTGGATGGTGGGAAGATGATGAAGTTTTCTAGATCAGACAGAGTTCTAAGAGAAATTGTGTCTGAGTCTATCCCAGCCATGGCTTTGCAATTTCAGGAGTTCACTGATGAAGTCATAACTTCAATTAAGGAACACTTGAAAGGTCTCATTGATATGCCAGAGAAGAAAGGGGAATTGATGAACCTCCAGAACCGGCTTGGCCGAAGATCGGACATCACCAGAGAGACTCTTTCCAAGTGTCATAAAGAGCAGCTAGAGATTTTGACTGCAATCAAGATGGGGCTTGGGAGTTTCTTGTCTGGTAAGTTCCAAATCTTGGAGATGGTGGAGGTTTTCTTGTATATGAGATGTAGAAATGTGAACTGCAAGAGCTTACTGCCTGTTGAAGACTGTGACTGCAAGATGTGCTCTGGAAATAAGGGGTTTTGCAGTTCTTGCATGTGTCCTGTTTGTATGAGCTTTGATTGTGCAAGTAATACTTGTAGCTGGGTTGGTTGTGATGTTTGTTCCCACTGGTGTCATGCTACCTGTGCAATTCAGAAGAATCTAATCAAACCTGGGCCTATCTTGAAGGGTCCTTCTGGAACCTCTGAGGTGCAGTTTCATTGTATTGGCTGCGGACATACTTCAGAAATGTATGGCTTTGTTAAAGAGGTCTTTGTGTGTTGTGCCAAGGATTGGGGCCTGGAAACATTGATGAAGGAGCTTGACTGTGTGAGGAGGATTTTCCAGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATTTTAAGATGGATGACATGCTGTCAAAACTTCAAGCTAAACTGGTTTCTCCTTCGGAAGCTTGCAACTTTATCATACAGTTTTTCAGCTACACGGATGGCATGTCAGATTTCTCAGCTTCTGGTATATCCACAAAGGATTTGCCAAAATCTAAGGCTAACCTTGCAGTGGACACAACATCATCTCTTCCACAATCTACTTCTCTAATACCAAAATACACTTATGACTTGAGCTTCACTAGGTCAAATGATCTTCAACAGAAAGACCTCAAAACCTCCCTCTTGAGTGAACAAAAAAAGGAGTCTGATTTGCACTTTGAGGCTTTACTAAGGAAAGGAGGAGGGCTTGAAAGCTTGGAGAGCATCATACGTATAAAAGAGGCCGAAGCCGGAATGTTCCAGAGCAAGGCAGATGAGGCAAGGAGAGAGGCAGAGGGATTCCAGAAGATGATCAAGACAAAGACTGCACAGATGGAGGAGGAGTATGCAGAAAGGCTTGGCAAGCTTTGCTTGCATGAGGCAGAGGAAAAGAGGAAGAAGAAATTTGAGGAACTCAATGTCTTGCAAAATTCACATTATGATTACTTCAACATGAAAAGCAGAATGCAAGATGAGATTCATGGCTTGTTGAAGAGAATGGAAGCAACAAAGCAGCAATGGGTTTAA 2505 0.4443 MIGGKDLVPNGVDTEGENSRSKVQLQKQQHRDFSQGKEHPQEKKQSYAEKKKVGVDEFQSAPTKVASSGLQELTLSYLCDNPKLSLVEREIGGRSLVKGKEVVVYGNSDQDQDELRFKSSLEEVSAFSARQYFEQDCLRRKVAVGNQKQDQDEKWVERDFLSLSESRENSSKRSIEEESEREKIGGSKKQKLETLSLSLALPDVSLSLTASNALQNGDQLVKPKPGMPSTRPTTTINSCSNDYTAASLSQSYSHPFSHNPSCSITRNSTDNFEYSHSKDDQIWHCGEGTNGSVHSRFKPIGDGVALANHSFMQGNSHYKATSSDNQSFFPSELPARVRFEAQSEGSRGKTSENLRGLEGLDGGKMMKFSRSDRVLREIVSESIPAMALQFQEFTDEVITSIKEHLKGLIDMPEKKGELMNLQNRLGRRSDITRETLSKCHKEQLEILTAIKMGLGSFLSGKFQILEMVEVFLYMRCRNVNCKSLLPVEDCDCKMCSGNKGFCSSCMCPVCMSFDCASNTCSWVGCDVCSHWCHATCAIQKNLIKPGPILKGPSGTSEVQFHCIGCGHTSEMYGFVKEVFVCCAKDWGLETLMKELDCVRRIFQGSEDRKGKELHFKMDDMLSKLQAKLVSPSEACNFIIQFFSYTDGMSDFSASGISTKDLPKSKANLAVDTTSSLPQSTSLIPKYTYDLSFTRSNDLQQKDLKTSLLSEQKKESDLHFEALLRKGGGLESLESIIRIKEAEAGMFQSKADEARREAEGFQKMIKTKTAQMEEEYAERLGKLCLHEAEEKRKKKFEELNVLQNSHYDYFNMKSRMQDEIHGLLKRMEATKQQWV* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01724 834 CDD PHD_OBE1_like 506 565 IPR047578 -
Lapu2g01724 834 MobiDBLite consensus disorder prediction 1 54 - -
Lapu2g01724 834 Coils Coil 812 832 - -
Lapu2g01724 834 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 513 533 IPR004082 -
Lapu2g01724 834 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 730 750 IPR004082 -
Lapu2g01724 834 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 586 605 IPR004082 -
Lapu2g01724 834 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 467 488 IPR004082 -
Lapu2g01724 834 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 769 791 IPR004082 -
Lapu2g01724 834 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 389 411 IPR004082 -
Lapu2g01724 834 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 428 443 IPR004082 -
Lapu2g01724 834 MobiDBLite consensus disorder prediction 166 188 - -
Lapu2g01724 834 Pfam PHD - plant homeodomain finger protein 476 600 IPR032881 -
Lapu2g01724 834 Coils Coil 750 770 - -
Lapu2g01724 834 MobiDBLite consensus disorder prediction 24 54 - -
Lapu2g01724 834 Pfam Coiled-coil region of Oberon 695 823 IPR032535 -
Lapu2g01724 834 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 22 833 IPR004082 -
Lapu2g01724 834 Coils Coil 784 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01724 Lapu-Chr2 30972618 30976544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01724 476 681 PHD Gene Family AT5G57380 23.301 1.15e-07 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01724 2 30972618 30976544 Lapu2g01724 2 30972618 30976544 ECH