Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01719 ATGGGTCTTAGTTTGAAGATGCAGAGCCACCATCCCGTGGCTTTGAGGTTGTATGATCAAATGGGGTCTAAAAGAAAGTACACTTTCATTCAGGCTCATAGAGCGTGGCTTCCAAAGTTCTTGCTGCTGTGGATCCTGCTAATGGCTTTGATCAGTTGGTGCATCTTCAGCAAAATGGATGATGACACTAAAGTCAGAAGGAAGGAGGTTTTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGCTACAAGATCAGTTTAGTGTTAGTGTTAACCATGTCCATGCCCTTGCCATCCTCGTTTCAACATTCCATTACTACAGATACCCTTCTGCTATTGACCAGGAAACCTTTGCCGAGTATACAGCCCGGACAGCATTTGAACGGCCATTGTTGAGTGGTGTGGCATATGCACAAAGAGTTGTTAACTCTGAGAGAGAGAGATTTGAGAAAGAACATGGTTGGGTTATAAAGACAATGGAAGAAAAGTCTTCTCTGGCTAGAGATGAGTATGCACCGGTGATATTTGCGCAAGAAACTCTGTCATATCTTGAGTCTCTTGATATGATGTCTGGAGAGGAGGACCGAGAAAACATTTTAAGGGCTAGAGCCACTGGGAAAGCTGTTCTGACGAGCCCTTTCAGGCTTTTGGGTTCTCACCATCTTGGTGTGGTTTTAACATTTCCTGTGTACAAGTCTAAGCTCCCTCAGAAGCCAACAGTGGAAGAACGCATCGAAGCAACTGCAGGATATGTTGGAGGGTCCTTTGATGTTGAGTCCCTTGTTGAGAATTTACTCGGGCAACTTGCTGGTAACCAAGCAATTTTGGTGAATGTATATGATATCACAAACTATACTAATCCACTAATAATGTATGGCAAGCCCTATGAAGAAGGTGATATGTCTCTAGCCCATGAAAGCAAGCTTGATTTTGGAGACCCGTACAGGAAACATCAAATGATATGTAGGTACCATCAGAAGGCGCCAACAAATTGGATTGCTGTTACCACGGCATTCCTATTCTTTGTGATTCTTATATTAGTGGGTTACATTTTATACGGTGCTGGAAATCATATTGTCAAAGTGGAAGATGATTTTCATGAAATGCAGGAATTAAAAGTTCGAGCTGAAGCAGCCCATGTTGCCAAGTCACAGTTTCTAGCTACGGTCTCTCATGAAATTAGAACGCCTATGAATGTTACTTTAGGAATGCTTGCGCTGCTTCTAGATACAGAATTGAGTTCAACCCAACGGGATTATGCTCAGACTGCTCAAGCATGCGGAAAGGCACTGATAACATTAATAAATGAGGTACTGGACAGAGCTAAGATTGAAGCTGGCAAGTTGGAGCTGGAGGCTGTTCCATTTGATCTTCGTTCCATACTTGATGATGTTCTTTCCCTCTTTTCTGAGAAATCTAGACACAAAGGTTTAGAGCTGGCGGTGTTTGTTTCTGATAAAGTTCCGGATATTGTCATGGGAGATCCTGGGAGATTCAGACAAATAATAACAAATCTTGTTGGCAACTCTGTTAAATTTACTGAACAGGGACATATATTTGTCAAAGTCCATCTAGGGGACCATAGAAAGTCCACAAGGAATGGAAAACATGAGACTTTTCTAAATGGAGAATCAGATGAAGTTTTCCATATAGCTGATGATTATCATTTCAAAACCTTAAGTGGACGTGAAGCAGCTGATGAACGGAACAACTGGGATAATTTTAAGCACCTAATTGCTGATGAAAGATGTTGCCTTGATTCTTCAAGAGAAATGGGTGCTACTTGTGAGCAAGTCACCTTGAGGGTGTGTGTGGAAGACACAGGAATTGGAATTCCTTTTTCAGCACAGGACAGGATATTCATGCCTTTTGTGCAGGCTGACAGCTCAACTTCACGAAATTATGGGGGTACTGGTATTGGCTTGAGTATTAGCAAATGTCTGGTTGAACTAATGGGTGGTAAGATAAACTTCATAAGTCGACCCCAGGTTGGGAGCACTTTCTCGTTTACTGCAGTTTGTGGAACATTTCAGAAAAGTATGGTTAGTGACATGAAGAAAAATTTGGAAGATCTTCCTTCAAGTTTTAGAGGGCTGAAAGTCATTGTCATTGATGGAAAACCTGTTAGAGCCGCAGTGACTAGATACCATTTGAAGAGACTGGGTATACTGGTTAAAGTTGAAAATAGCATCAGTGAGGCTGTTGCTTTATGTGGTAAAAGTGGTTCTTTGAACTCAGGAATGTTCCAGCCAGATATTATCATGGTGGAGAAGGACACATGGATATCTGGAGAGGATGGGATTTTCAATATATGGAAACAGAATGGTCACATGTTTAACTTGCCTAAAATGATCCTTCTGGCAACCAATATTAGTAACACTGAATTTGATAAAGCCAAGGCCATGGGTTTCACTGATACTGTGATCATGAAGCCTCTGAGAGCTAGTATGGTGGCTGCTTGTCTTCAGCAAGTTTTGGGGATGGGGAAGAAGAGACAGCTAGGGAAAGACATGCCTAATGGTTCTGCTTTTCTACATAGCCTTCTCTATGGAAAGAAAATCTTGGTGGTTGATGACAATGGGGTAAATCGGAGGGTTGCTGCAGGTGCTCTGAAAAAGTTTGGAGCTGATGTGAAGTGTGCTGAAAGTGGCAAAGCCGCACTTGAAATGCTGCAATTGCCTCACAATTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGACGGATTCCAAGCAACGAGCCAAATTCGGATGATGGAGAGCAAGGCAAACGAGGAGATGAACAATGGGAGTGAGTGGCATGTGCCTATATTGGCCATGACAGCTGATGTGATCCATGCTACATATGATGAGTGCTTGAAACGTGGCATGGATGGATATGTCTCAAAGCCATTTGAGGAAGAGAATCTGTATCAGGAAGTTGCAAAGTTTTTCAAATCAAAGACCATCTCAGACTCATCACAATGTGCTTCTTTCTAG 2982 0.4229 MGLSLKMQSHHPVALRLYDQMGSKRKYTFIQAHRAWLPKFLLLWILLMALISWCIFSKMDDDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRYPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERERFEKEHGWVIKTMEEKSSLARDEYAPVIFAQETLSYLESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPQKPTVEERIEATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNYTNPLIMYGKPYEEGDMSLAHESKLDFGDPYRKHQMICRYHQKAPTNWIAVTTAFLFFVILILVGYILYGAGNHIVKVEDDFHEMQELKVRAEAAHVAKSQFLATVSHEIRTPMNVTLGMLALLLDTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLGDHRKSTRNGKHETFLNGESDEVFHIADDYHFKTLSGREAADERNNWDNFKHLIADERCCLDSSREMGATCEQVTLRVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGKINFISRPQVGSTFSFTAVCGTFQKSMVSDMKKNLEDLPSSFRGLKVIVIDGKPVRAAVTRYHLKRLGILVKVENSISEAVALCGKSGSLNSGMFQPDIIMVEKDTWISGEDGIFNIWKQNGHMFNLPKMILLATNISNTEFDKAKAMGFTDTVIMKPLRASMVAACLQQVLGMGKKRQLGKDMPNGSAFLHSLLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKAALEMLQLPHNFDACFMDIQMPEMDGFQATSQIRMMESKANEEMNNGSEWHVPILAMTADVIHATYDECLKRGMDGYVSKPFEEENLYQEVAKFFKSKTISDSSQCASF* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01719 993 SMART HisKA_10 381 446 IPR003661 GO:0000155|GO:0007165
Lapu2g01719 993 Gene3D - 59 111 - -
Lapu2g01719 993 Pfam CHASE domain 111 291 IPR006189 -
Lapu2g01719 993 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
Lapu2g01719 993 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 493 671 IPR003594 -
Lapu2g01719 993 PANTHER TWO-COMPONENT HISTIDINE KINASE 28 976 - -
Lapu2g01719 993 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 435 670 IPR036890 -
Lapu2g01719 993 Pfam Response regulator receiver domain 853 975 IPR001789 GO:0000160
Lapu2g01719 993 SMART REC_2 851 975 IPR001789 GO:0000160
Lapu2g01719 993 ProSiteProfiles Response regulatory domain profile. 699 825 IPR001789 GO:0000160
Lapu2g01719 993 FunFam Histidine kinase 4 353 444 - -
Lapu2g01719 993 Gene3D - 693 829 - -
Lapu2g01719 993 Gene3D - 846 987 - -
Lapu2g01719 993 SMART HKATPase_4 493 675 IPR003594 -
Lapu2g01719 993 CDD HisKA 381 442 IPR003661 GO:0000155|GO:0007165
Lapu2g01719 993 ProSiteProfiles Histidine kinase domain profile. 388 670 IPR005467 -
Lapu2g01719 993 SUPERFAMILY CheY-like 694 826 IPR011006 -
Lapu2g01719 993 Gene3D - 355 444 - -
Lapu2g01719 993 Gene3D - 445 676 IPR036890 -
Lapu2g01719 993 FunFam Histidine kinase 4 112 327 - -
Lapu2g01719 993 Gene3D CHASE domain 112 327 IPR042240 -
Lapu2g01719 993 PRINTS Bacterial sensor protein C-terminal signature 659 672 IPR004358 GO:0016310|GO:0016772
Lapu2g01719 993 PRINTS Bacterial sensor protein C-terminal signature 600 614 IPR004358 GO:0016310|GO:0016772
Lapu2g01719 993 PRINTS Bacterial sensor protein C-terminal signature 618 628 IPR004358 GO:0016310|GO:0016772
Lapu2g01719 993 PRINTS Bacterial sensor protein C-terminal signature 635 653 IPR004358 GO:0016310|GO:0016772
Lapu2g01719 993 Pfam His Kinase A (phospho-acceptor) domain 381 446 IPR003661 GO:0000155|GO:0007165
Lapu2g01719 993 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 447 IPR036097 GO:0000155|GO:0007165
Lapu2g01719 993 SUPERFAMILY CheY-like 850 979 IPR011006 -
Lapu2g01719 993 CDD REC_hyHK_CKI1_RcsC-like 853 975 - -
Lapu2g01719 993 ProSiteProfiles Response regulatory domain profile. 852 979 IPR001789 GO:0000160
Lapu2g01719 993 CDD HATPase_EvgS-ArcB-TorS-like 498 671 - -
Lapu2g01719 993 SMART CHASE_2 108 293 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01719 Lapu-Chr2 30921960 30928105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01719 11 988 Histidine Kinase Gene Family AT2G01830 70.382 0.0 1383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu2g01719 HATPase_c 7.7e-31 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01719 2 30921960 30928105 Lapu2g01719 2 30921960 30928105 ECH