Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01686 ATGCTCCGAAACCTTTGGAAACGTTGTTGTCGCCGACGTTCGGGTCCCACTTTACTCTGCTCCGAACCCACTTCGCTGTTTCACAGTGCCACCAGCGTGGATGGAAACCCTGGGTGGAGATGGAAAATCGAAGAAGAACCCTCGCTTCAGATTTCGCACCCTTGGCCCGAATGGGTTCAACTCATGAAGTGCTTGCTCCAAAAGGGACACTTTCTTCACGAAGAGGGAAACGTGTTTCGCAACAACACTGTTTTGGGTTCCAAAGATTGCAATGTCATTAGAACCGCGTGCCTCAATTTCGGTAGAGACCACTTTCATATTTTAAGATTCCTATCACGAAAAGATATAGGAGTTACCGTGGCACTTGGATGTCCGAGCTTAGATAGGAAAGTGGTCAACTCTGGAAAGCGTCTGAGAGCATATGTGGGTATTGATGAGGGAAATGTATGCAGTTCCTGCAATTTGAGAGGGGACTGTGAAAGGGCATTCGTGAAGGCACGTGAAGATGAAGGTGGAAGAACAGTGGATGTTATGCGTATTATATTGACGTATGGGCTTGACCCAATTACTGGTTCAGTGGATAACAAACCGTGTCTTACTAAAAAGGTAGAAGATTCTGTGAGAAGACTGCTGAAAGAAATAGTAGAGCACAGTACCAAAGAGGAAAATTCTAATTTTCCAGACAGCAGAGAGGTTGTCATGGGACATGTTCATTCCAATCAGCAAGGCAAGGGCAAAACTGATGTTGCAATGATGAAGCAAGGGGACTGGCTTTGCCCAAAATGCAATTTCATGAACTTTGCTAGAAACATCAGGTGCTTGCGCTGTGACAGCCTCTTTGAGGAAAAAATCAGGCAGTTGAAGCAGGATAACAATCACTTACCTTTGAAGAAGGGAGACTGGATATGCAACGTATGCAATTTCCTGAATTTTGCGAAGAATACAAGATGTTGGCAATGCAGAGAGAGGCCTTCCAATCGTCACCTTAATCCTGGTGAATGGGAATGTGACTCGTGGGTTTTTTTAACCATACAGTTAATTTGTTGA 1047 0.447 MLRNLWKRCCRRRSGPTLLCSEPTSLFHSATSVDGNPGWRWKIEEEPSLQISHPWPEWVQLMKCLLQKGHFLHEEGNVFRNNTVLGSKDCNVIRTACLNFGRDHFHILRFLSRKDIGVTVALGCPSLDRKVVNSGKRLRAYVGIDEGNVCSSCNLRGDCERAFVKAREDEGGRTVDVMRIILTYGLDPITGSVDNKPCLTKKVEDSVRRLLKEIVEHSTKEENSNFPDSREVVMGHVHSNQQGKGKTDVAMMKQGDWLCPKCNFMNFARNIRCLRCDSLFEEKIRQLKQDNNHLPLKKGDWICNVCNFLNFAKNTRCWQCRERPSNRHLNPGEWECDSWVFLTIQLIC* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01686 348 ProSiteProfiles Zinc finger RanBP2 type profile. 297 326 IPR001876 -
Lapu2g01686 348 ProSitePatterns Zinc finger RanBP2-type signature. 257 276 IPR001876 -
Lapu2g01686 348 ProSitePatterns Zinc finger RanBP2-type signature. 301 320 IPR001876 -
Lapu2g01686 348 Gene3D - 288 327 - -
Lapu2g01686 348 Gene3D - 245 279 - -
Lapu2g01686 348 SUPERFAMILY Ran binding protein zinc finger-like 250 278 IPR036443 -
Lapu2g01686 348 SUPERFAMILY Ran binding protein zinc finger-like 290 323 IPR036443 -
Lapu2g01686 348 PANTHER ZINC FINGER PROTEIN 294 339 - -
Lapu2g01686 348 Pfam Zn-finger in Ran binding protein and others 253 278 IPR001876 -
Lapu2g01686 348 Pfam Zn-finger in Ran binding protein and others 297 320 IPR001876 -
Lapu2g01686 348 ProSiteProfiles Zinc finger RanBP2 type profile. 253 282 IPR001876 -
Lapu2g01686 348 SMART zf_4 299 323 IPR001876 -
Lapu2g01686 348 SMART zf_4 255 279 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01686 Lapu-Chr2 30584206 30587617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01686 49 326 EF-hand Containing Proteins AT1G55040 41.234 1.22e-60 206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01686 2 30584206 30587617 Lapu2g01686 2 30584206 30587617 ECH