Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00770 ATGCTCATAGCTTCTGGCAGAACAGGGAGTTTAGTTATGGCGGAAAACAAAGAAGAAACCTATTCTGAAACTTCTGAATGTTCATCAGCCTTGACCATGCCAATGGCTACCAAGTGCAGATACTTCTTTCATAGATTATGCGGTTCTACCGATTCATGGAACAAAAGCACCACCCCAAAAGGTCAAAGAATTTTCCACAGAGATGTGGAAAAAGAAGAATTCCAGTATGCTAGTAGTCACTGTCTCTCATCCTACTATAGTGTCTTTGTGGTTCGACTAGCAATCATGGTCATGCTAGCCATCTTGATAGGGCTTCTCACTATACTGACATGGCATTTCACGAAGATTTATACGACAAAATCACTTAACAGTTTGGCATATGGTTTGCGTTATGAACTTCTGCAGCGCCCGGTTTTGAGGATGTGGAATATTTTGAACTCTACTTCTGAAATTACTACAGCTCAGGTCAAACTGTCTCAGTATGTGATCAGACGTCACAGCAACTCTGCGACTCAAGCAGAACAAGTTGAGCTGTATGAAGCGATGAGGGCTGTAACCTGGGCTTTATTTGCAAGTCGGAAAGCTCTAAACTCTATAACTATCAACTATAAGAATGGATTTGTGCAAGCATTCCACAGAGATCTGAAGGACAACAACACATTTTACATCTATTCTGATCTTTCAAATTACTCCATGGGAGCCAGCAACTATAATGATGCCAATTCTGTTTCAACGCATCAAGCTTGGGATGATAAAGCCCCTCGTGGAAACTATTCTGCAATCTGGTACCGTGAGCCACTTGACCCTGTGAGTGGTGAAAAGATTGGGAAAGCTATGAAAATTGCGCCTGAAGACTTGATCAACATAGCTGGCCTTTCCCAAGTACCAGATGGTGTAGCTTCGTGGCATGTTGCCGTGAGCAAGTTCACAGATTCGCCACTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATAAGACCATTATGGCAGTTGTGGGGGTCACAACTGCACTTTATAGTGTAGGACAGTTAATGAGAGAGCTTGTTGAGTTGCACAGTGGTCATATGTATTTGACTTCCCAAGAGGGTTATTTACTGGCAACTTCCACAAGTGCACCTCTTCTGGCAAATTCAACAAAGCCTCCTAAGCTTAAGATGGCCGTTGACTGTGAAGACGATGTAATTCGACAGGGAGCTGAGTGGTTGCAGAGAACTTATGGGAACAACTTTCCTCCAAGTCACGAGGTTCATGTAGAGAATGTCAAGCTAGGCCACCAGAGATATTACATTGACTCATTCTTCCTGAATTTGAAGAGACTTCCTTTGGTAGGTGTGATTATCATACCAAGAAAGTATATCATGGGACAGGTAGATGAAAGAGCCTTCAAAACGCTGGTCATTCTGATATCTGCATCATTATGTATTTTAGTCATTGGGTGTGTTTGCATTCTGATATTGACAAACGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTGATAAGTCAACTGGAAGCAAGAAGAAAAGCAGAGGCATCAAGTAATTATAAAAGTCAATTCCTTGCGAACATGAGTCATGAACTGAGGACCCCAATGGCAGCAGTAATTGGGTTGCTTGACATTCTCATATCTGATGACTGTCTCACAAATGAACAATACTCAACAGTTACTCAAATAAGAAAATGCTCAACTGCTCTGCTCCGTCTTCTTAACAACATCTTGGATCTGAGTAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGATTTAGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCCGTTCAATGCATTAACCACAATGTGGAGACTGTTTTAGACTTGTCTGATGATATGCCAAAGGTTGTTCGGGGTGATTCTGCAAGGGTGGTTCAAATATTTGCAAATTTGATCAACAATTCAATCAAATTTACTCCATCGGGTCATATTGTTCTGCGAGGATGGAGTGAAAGTCCAAATTCTTGCGTTGGTAGTCCAAATTTTCCTCTTGACCAGAAGAAATTACGGAGTTTACAGAAGTGCAGAGAGAAACCAAATGCAAATCATTCAAAAAAAGCTTCTATAAAAGACAACAAAGTGATACTTTGGTTTGAAGTTGAGGACACAGGCTGTGGTATAGACCCGAGCAAGTGGGATTCCGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACCCGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGAAACTTGGTTAACAAGATGGGTGGGGACATCAAGGTAGTAAAAAAGGAGGGGGCAGGAACACTAATGCGATTATGCCTGCTTCTCAGTGCGCCCATGGATGTCACAGAACAACAGTGTGCAGTAGATTTGACAGACAATGGCTTAGTGGTACTGCTTGGCTTACATGGCAACATGGGTCGATTAATTACATCCAAGTGGCTACAGAAAAATGGGGTGTGCACAATGGAAGCATCTGACTGGAATGGACTAACTCAAATTTTGAGGGAACTATTTCATGCAAGAAGTTCAGTCCATAATGCTGACTTTGATGCACACTATCCAGCAAAAGAGGAATTAAAGTCTAAACTACTCAACATACGAGATATGAAGAACCCAGTTTTTGTCATTGTTGTTGACATTGGATTACTTGACCTGAGCACAGATATATGGAAGGAACAACTTAACTTCCTTCACAGGTATTTTGGTAGGGCAAAGTTCCTATGGATGCTAAATCATGACACTTCAAATAACATAAAGATGGAGCTCCGTAGGAAAGGGCATATACTGATGGTCAACAAACCCCTTTACAAAGCAAAAATGATCCATATTTTGGAATCCATCATAAAGGAGAGAAATTTTGAGCTACAAAAGAAAAACATGATTGTTCCAAGGACCACAATGAAAGAGGGAGATTTACACGAATTTCTTGAGATTGATTCCACTCATTTTGATGCTGCTAGCTCTGATGATTCTGACATATCCGACTTAGGTGGTTCTAATCCTGTTAGTGCTAATGGAGATAAACCAGTTGAGAAGCTAGACAAATCTCATCCATCATCACCATACCATATGAATAACTCTCTAGTTAGATTAACCAATGAAAATGAATATTTGGAGGAAAATAACTTGAGGAAAGAAGAATCTTCTAGTCCCAGCTCCGATTATGCCACAGAAGACAACCAATCTAAATCACTGTCCACTAAAGAATCATCATCCATTTCAACAGGAGATCAGGATGGAGATTCTGAATGTGGGGAAACACATAGGGTCACCAGCTCAAGTAAAGCAGTTGATGGAAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCAGTACTTCAAAGGGTAGCAACTATAATGCTTGAGAAAATGGGAGCAGATGTAGTTGCTGTAGGTGATGGACAACAGGCAGTAGAAGCTCTCAATTGCATGTTCACAGCTGAAGATTGTAGAAGGGAATCACTCCAGAAGGAAAGAAACACAAGACCTCAAACAGAGATTTTGACTAGCCGTCCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTACGAGGCAACCAAAGAAATCAGGAAATCAGAAGTGGGAACAAGCTTGCACATTCCCATTGTTGCTCTTACAGCACATGCAATGTCATGTGATGAAGCCAAATGCCTGGAGGTGGGCATGGATGCTTACTTAACAAAGCCTATTGATTTCAAAATGATGGTGTCCACCATTCTTTCACTCACTAAGCAAACAACAACTTGA 3789 0.413 MLIASGRTGSLVMAENKEETYSETSECSSALTMPMATKCRYFFHRLCGSTDSWNKSTTPKGQRIFHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYGLRYELLQRPVLRMWNILNSTSEITTAQVKLSQYVIRRHSNSATQAEQVELYEAMRAVTWALFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMGASNYNDANSVSTHQAWDDKAPRGNYSAIWYREPLDPVSGEKIGKAMKIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKTIMAVVGVTTALYSVGQLMRELVELHSGHMYLTSQEGYLLATSTSAPLLANSTKPPKLKMAVDCEDDVIRQGAEWLQRTYGNNFPPSHEVHVENVKLGHQRYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPSGHIVLRGWSESPNSCVGSPNFPLDQKKLRSLQKCREKPNANHSKKASIKDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGDIKVVKKEGAGTLMRLCLLLSAPMDVTEQQCAVDLTDNGLVVLLGLHGNMGRLITSKWLQKNGVCTMEASDWNGLTQILRELFHARSSVHNADFDAHYPAKEELKSKLLNIRDMKNPVFVIVVDIGLLDLSTDIWKEQLNFLHRYFGRAKFLWMLNHDTSNNIKMELRRKGHILMVNKPLYKAKMIHILESIIKERNFELQKKNMIVPRTTMKEGDLHEFLEIDSTHFDAASSDDSDISDLGGSNPVSANGDKPVEKLDKSHPSSPYHMNNSLVRLTNENEYLEENNLRKEESSSPSSDYATEDNQSKSLSTKESSSISTGDQDGDSECGETHRVTSSSKAVDGKKSLEGLKILLAEDTPVLQRVATIMLEKMGADVVAVGDGQQAVEALNCMFTAEDCRRESLQKERNTRPQTEILTSRPYDLILMDCQMPKMDGYEATKEIRKSEVGTSLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKMMVSTILSLTKQTTT* 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00770 1262 Gene3D - 505 584 - -
Lapu2g00770 1262 FunFam Histidine kinase 1-like protein 505 584 - -
Lapu2g00770 1262 SMART HisKA_10 517 583 IPR003661 GO:0000155|GO:0007165
Lapu2g00770 1262 CDD HisKA 518 579 IPR003661 GO:0000155|GO:0007165
Lapu2g00770 1262 MobiDBLite consensus disorder prediction 1053 1085 - -
Lapu2g00770 1262 Pfam His Kinase A (phospho-acceptor) domain 518 583 IPR003661 GO:0000155|GO:0007165
Lapu2g00770 1262 PRINTS Bacterial sensor protein C-terminal signature 707 721 IPR004358 GO:0016310|GO:0016772
Lapu2g00770 1262 PRINTS Bacterial sensor protein C-terminal signature 742 760 IPR004358 GO:0016310|GO:0016772
Lapu2g00770 1262 PRINTS Bacterial sensor protein C-terminal signature 725 735 IPR004358 GO:0016310|GO:0016772
Lapu2g00770 1262 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 572 778 IPR036890 -
Lapu2g00770 1262 Gene3D - 1090 1260 - -
Lapu2g00770 1262 MobiDBLite consensus disorder prediction 1046 1102 - -
Lapu2g00770 1262 Coils Coil 1033 1053 - -
Lapu2g00770 1262 ProSiteProfiles Response regulatory domain profile. 1112 1257 IPR001789 GO:0000160
Lapu2g00770 1262 ProSiteProfiles Histidine kinase domain profile. 524 782 IPR005467 -
Lapu2g00770 1262 SUPERFAMILY CheY-like 1109 1257 IPR011006 -
Lapu2g00770 1262 PANTHER TWO-COMPONENT HISTIDINE KINASE 73 787 - -
Lapu2g00770 1262 SMART REC_2 1111 1253 IPR001789 GO:0000160
Lapu2g00770 1262 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 630 780 IPR003594 -
Lapu2g00770 1262 MobiDBLite consensus disorder prediction 991 1033 - -
Lapu2g00770 1262 Gene3D - 585 783 IPR036890 -
Lapu2g00770 1262 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 505 584 IPR036097 GO:0000155|GO:0007165
Lapu2g00770 1262 Pfam Response regulator receiver domain 1113 1252 IPR001789 GO:0000160
Lapu2g00770 1262 CDD REC_hyHK_CKI1_RcsC-like 1113 1253 - -
Lapu2g00770 1262 SMART HKATPase_4 630 782 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00770 Lapu-Chr2 6906499 6914513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00770 34 1258 Histidine Kinase Gene Family AT2G17820 64.228 0.0 1572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu2g00770 HATPase_c 2e-23 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00770 2 6906499 6914513 Lapu2g00770 2 6906499 6914513 ECH