Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0260 ATGGATCAGATGACGGATTCGGAAATGGATCAACAGAATCAAGGATATTTACGTTCTGAACCCTGTATCATTTCGAGAGGCTCCACAAGTACCTCACAGCCAAATATCCGCACAATGGTGGCAGCTTCAGGGAATACAACTAATGTTGATTCTTACTATTTACAAGATGCTTATGACAATACTAGGTTGTACGGGTTGGCACAATACAATGGCATTCAGCATCAACATAATCTTGACATGGCTGGTGCAACTGCAGCCAACATATATTATTCTGGCATGAATCCTTCTTCTAGTAGTGTTGTATTTACCCCTTTGCCTCTAAATCACCGAGCCTCTGACCAGTTGCCAGGCTCAAATACATTTCCAGTTTCCGGAAGTTCTTCAGATAATTTTGGAAGAAGCAGCGGTTTCATGGACGACGTCAGAGGTCCGTACAAAAGGAAAATTGCTGAAGGGATCAGAGGAAATCACCAGTATTTTAATGCTTCAGCCAGTTCTTCCATTGCTCCCCCGAATGCAAGACACGCTGATGGGGTCGCTATGATGGATACTGCGTCATTTTCCTTGCACATGCCTTCACTTGTGGAAGTAGGACCACATGGTAGTGCATGGAACAGGTCAGGTGAGTCTATTATGGTGCATGACCACAACAGTTTGATTCGTGGAAACTATTTATGTCCGCACTTTCAGCCAGCTCCTCCTCCATGGTTTGACCAGCAGCTGAACAATGATGGCCATACTACAGCCTGGAATCAGCCTCTTCCGATGCCTTATATGCAAGCACCAAATGTTAATGGAAATTCATTAGAGAATGCAAGTAGGGGTCTGCAGAGATATCACGACCCAGCCAGCAACAGAAATGGCCTCAGGTTTCCTCATCCCCCTCCTGCGAACCACCCACATCACAATTATCATCATCCAGCACTACCTATGCAAGGAGTAAGAGGTCACAATATCATCTTTCACCCTCCTGTAACTGCAGCTTCATTAAGAGTTCCTACAAATCCTTCACGAAATGCCGCGATCCCCACACAGGCTGGTTTTGAGATGGTTCCTAGGCATTTTGGCCCTGTGCCGCCAGAAGGCCTACAGATATACCGACCTCATAGAGCAATCATGCCCGATGCAACTCTCAGACATAGAAATCTTGCCCCCATGGGATTTCTTCAAGTGGATGATGTTGCTTTAATTGATGAAGTGGGAAATCCGGTTGACCATCACAGAGATATGCGCTTGGACATCGAGGATATGTCTTATGAGGATCTTCTTGCATTGGGTGATCGGATCGGCAAAGTAAGCACCGGCTTATCAGAAGAAACAATCTCAGCTGAATTGAAGATGAAGACTTATGTAACTCCTGCTGCTGTTATTAATTTAGAGGAGCCAGCTTCTGAAGATCAGGAATCTGATTCTTGTATAATATGTCAGGATGAATATAAGGACGAAGAGAATATCGTAGTTCTTCGATGCGATCATGAATATCATGCAGATTGCTTAAAGAAATGGTTGCTTGTCAAAAATGTCTGCCCTGTATGCAAATCAGAAGCCTTGACTCCTGAAAGGAAGGATGTATAG 1575 0.4444 MDQMTDSEMDQQNQGYLRSEPCIISRGSTSTSQPNIRTMVAASGNTTNVDSYYLQDAYDNTRLYGLAQYNGIQHQHNLDMAGATAANIYYSGMNPSSSSVVFTPLPLNHRASDQLPGSNTFPVSGSSSDNFGRSSGFMDDVRGPYKRKIAEGIRGNHQYFNASASSSIAPPNARHADGVAMMDTASFSLHMPSLVEVGPHGSAWNRSGESIMVHDHNSLIRGNYLCPHFQPAPPPWFDQQLNNDGHTTAWNQPLPMPYMQAPNVNGNSLENASRGLQRYHDPASNRNGLRFPHPPPANHPHHNYHHPALPMQGVRGHNIIFHPPVTAASLRVPTNPSRNAAIPTQAGFEMVPRHFGPVPPEGLQIYRPHRAIMPDATLRHRNLAPMGFLQVDDVALIDEVGNPVDHHRDMRLDIEDMSYEDLLALGDRIGKVSTGLSEETISAELKMKTYVTPAAVINLEEPASEDQESDSCIICQDEYKDEENIVVLRCDHEYHADCLKKWLLVKNVCPVCKSEALTPERKDV* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0260 524 CDD RING-H2_PA-TM-RING 472 513 - -
Lan9g0260 524 SMART ring_2 472 512 IPR001841 -
Lan9g0260 524 MobiDBLite consensus disorder prediction 278 308 - -
Lan9g0260 524 SUPERFAMILY RING/U-box 466 518 - -
Lan9g0260 524 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 130 521 - -
Lan9g0260 524 ProSiteProfiles Zinc finger RING-type profile. 472 513 IPR001841 -
Lan9g0260 524 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 130 521 IPR045191 GO:0061630
Lan9g0260 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 517 IPR013083 -
Lan9g0260 524 Pfam Ring finger domain 470 513 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0260 Lan-Chr9 3400548 3404773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0260 405 517 C3H Transcription Factor Family AT2G15530 49.565 5.74e-34 134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0151 19 1341567 1345768 Lan9g0260 9 3400548 3404773 LSH
Lan5g0905 5 22075662 22079787 Lan9g0260 9 3400548 3404773 LSH
Lan9g0260 9 3400548 3404773 Lan8g1367 8 20515151 20519681 PCT
Lan9g0260 9 3400548 3404773 Lan13g0587 13 4697066 4701918 PCT
Lan8g1367 8 20515151 20519681 Lan9g0260 9 3400548 3404773 PCT
Lan13g0587 13 4697066 4701918 Lan9g0260 9 3400548 3404773 PCT