Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0250 ATGTCGCATTTGGAAAAAGGGTTGAATGATTCCATAGCGAATCGTTTCAGTGACTCAGAGAACTCCGGCGAGTTCAACAAGCCGGATTTTCGAGAACTCGATCTGGGTTCACCCGTTTCAACGTTACGGACCCGTGGAATCGGGTCTGGACCCGTTGCAAGTACTAGTTCAAGTTCTTCTGGATCCTTTCCTAAAAGATCGGAATCTGAACCCACTATTAATAATGCGAACTACTCCGGTGAACTTTCCGGTGAGAATATTCCGAGTAATGCGCGTGGCTGCAGCGGTTCTAAGCCGGGTCATGGAAGATCCGACTCGGGAACCGCTGCGCCATTAATTTATTCCGGCCAGTCTAGTCAGAGTGTGAATTCGCCGCTATTGAATGTGCTTCCCACCGGGAACATATGCCCCTCGCGGCGGATCGTGAAGACTGGCATGGCCACGAATCGGGGGTCAAGGAGTGATGTATTAGGCACTGGTACCGGGAATTATGGCCATGGAAGCATAATGCGGGGTGGGAAAGAGGTTTTGGGTTTGGAGAATGTGAAGGGTGTAGGGAGTGAGGGAGTGAAGAGTGTGGATCCGGAGGAGTTGAAGAGAGTAGGGAATGAGCTTTATAAGAAGGGACATTTTGTTGAAGCTTTAAGGTTGTATGACAAGGCTATTGCCTTGTCGCCGAGGAATGCCGCTTATCGGAGCAACCGGGCAGCGGCTTTGACGGGTTTAGGGAGGTTGGTGGAGGCAGTGAGGGAATGTGAGGAGGCTGTGATGTTGGATCCTAATTATGGTAGGGCTCATCGCCGATTGGCAACTCTTTTCCTCAGGCTAGGACAAGTTGAGAATGCCAGGAAGCATTTATGTCACCTTGGGCTGCAGTCGGATCTGTCTGAGATGCAGAAGTTGCAAATGGTGGAAAAGCATATGAGCAAATGCGCAGACGTAAGAAGGATAGGAGATTGGAGAAGTGTTTTGCGGGAAGTTGATGCTGCTATTGCTGCTGGAGCCGACTCTTCTCCTCAGCTCTTTATGTGTAGAGCTGAAGCTCTTTTGAAGCTCCACCAAATTGATGATGCAGAATCAATTTTGTCGCATCTTCCCAAATCAGAACAGAATACTAATTCCTCTTCACAAGCAAGACTTTTTGGGATGCTTTCTGAAGCCTATTCCTACTTTATCAGAGCTCAGATTGAGATGGAATACGGAAGGTTTGAGAATGCCGTTACAGCAGCAGAGAAGGCCAGTCATATTGATTCCAGGAATGTTGAAGTTGCTGTCTTGCTCAACAATGTAAGGATGGTTGCAAGAGCTCGAGTGCGTGGCAATGATCTTTTTAAATCCGAAAGGTTCACTGAAGCTTGCTCAGCGTATGGTGAAGGTTTGAAGCTGGACCCTTCAAATTCCGTTTTATATTGCAATAGAGCTGCTTGTTGGTTTAAACTTGGACAATGGGAAAGATCAATTGAAGACTCCAATCAAGCTTTACTTATCCAACCAAATTACACAAAAGCCCTTCTTCGAAGGGCTGCTTCATACAGCAAGCTTGATAGGTGGGAAGAAGCTGTCAAAGATTATGAGGTCTTGCGGAGAGACCTTCCAAATGACAATGAAGTTGCTGAAGCTCTTTTCCATGCACAAGTTGCATTGAAGAAATCTCGCGGGGAAGAAGTACATAATTTGAAATTTGGCGGTGAAGTGGAAGAAGTTTCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGCCCATTTTAATATTGCATCGAATTTGCAATGCAAGCAAATATCGCCATTTGTGGATACACTATGTGGTCAATATCCATCTATTAACTTCCTCAAGGTCGATATTCAAGAATGTCCAACAATCGCCACTTCTGAGAATGTTAGGATTGTGCCAACCTTCAAGATATACAAAAACGGAAGTCGAGTGAAGGAAATCGTATGCCCAAGTCGTGATACGTTGGAACACTCCGTGAGGCGTTACAGCTTATAG 2004 0.4601 MSHLEKGLNDSIANRFSDSENSGEFNKPDFRELDLGSPVSTLRTRGIGSGPVASTSSSSSGSFPKRSESEPTINNANYSGELSGENIPSNARGCSGSKPGHGRSDSGTAAPLIYSGQSSQSVNSPLLNVLPTGNICPSRRIVKTGMATNRGSRSDVLGTGTGNYGHGSIMRGGKEVLGLENVKGVGSEGVKSVDPEELKRVGNELYKKGHFVEALRLYDKAIALSPRNAAYRSNRAAALTGLGRLVEAVRECEEAVMLDPNYGRAHRRLATLFLRLGQVENARKHLCHLGLQSDLSEMQKLQMVEKHMSKCADVRRIGDWRSVLREVDAAIAAGADSSPQLFMCRAEALLKLHQIDDAESILSHLPKSEQNTNSSSQARLFGMLSEAYSYFIRAQIEMEYGRFENAVTAAEKASHIDSRNVEVAVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLKLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALLIQPNYTKALLRRAASYSKLDRWEEAVKDYEVLRRDLPNDNEVAEALFHAQVALKKSRGEEVHNLKFGGEVEEVSGLEQFRAAISLPGVSVAHFNIASNLQCKQISPFVDTLCGQYPSINFLKVDIQECPTIATSENVRIVPTFKIYKNGSRVKEIVCPSRDTLEHSVRRYSL* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0250 667 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 15 665 IPR044534 -
Lan9g0250 667 MobiDBLite consensus disorder prediction 1 126 - -
Lan9g0250 667 CDD TRX_family 572 659 - -
Lan9g0250 667 Gene3D Tetratricopeptide repeat domain 193 553 IPR011990 GO:0005515
Lan9g0250 667 SUPERFAMILY Thioredoxin-like 470 665 IPR036249 -
Lan9g0250 667 Gene3D Glutaredoxin 559 666 - -
Lan9g0250 667 SMART tpr_5 501 534 IPR019734 GO:0005515
Lan9g0250 667 SMART tpr_5 433 466 IPR019734 GO:0005515
Lan9g0250 667 SMART tpr_5 387 420 IPR019734 GO:0005515
Lan9g0250 667 SMART tpr_5 467 500 IPR019734 GO:0005515
Lan9g0250 667 SMART tpr_5 229 262 IPR019734 GO:0005515
Lan9g0250 667 SMART tpr_5 195 228 IPR019734 GO:0005515
Lan9g0250 667 SUPERFAMILY TPR-like 195 422 IPR011990 GO:0005515
Lan9g0250 667 Pfam TPR repeat 202 243 - -
Lan9g0250 667 MobiDBLite consensus disorder prediction 110 126 - -
Lan9g0250 667 Pfam Tetratricopeptide repeat 503 533 IPR019734 GO:0005515
Lan9g0250 667 ProSiteProfiles TPR repeat profile. 195 228 IPR019734 GO:0005515
Lan9g0250 667 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 15 665 - -
Lan9g0250 667 Pfam Thioredoxin 595 661 IPR013766 -
Lan9g0250 667 MobiDBLite consensus disorder prediction 42 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0250 Lan-Chr9 3259133 3262944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0250 432 577 U-box Gene Family AT3G07370 28.415 9.66e-09 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0139 19 1216144 1219976 Lan9g0250 9 3259133 3262944 LSH
Lan5g0885 5 21853020 21856990 Lan9g0250 9 3259133 3262944 LSH
Lan9g0250 9 3259133 3262944 Lan8g1354 8 20342982 20346692 PCT
Lan9g0250 9 3259133 3262944 Lan13g0597 13 4826618 4830084 PCT