Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1367 ATGGAACAACAAAGGCGTGGCTATTTTCATTCTGATCCGGGTATCCCTTCCAGTGGGACCAATATCTCTACACCTAATATCCACACAGTGGCGACATCTTCAGGGAACACAACTAATCTCGACTCCCATTTTTTACCAGTATCTGGAGCATACAAAAGGAAAACTGCTGGAAGGATAAGAGGAAATTATCAGCATTTCAATGCCTCGGCCAGTTCTTCAGTTGCTTCGCCCAATGCTAGATACAGTGATGGGGATGGTATGATGGATATTGCATCGTTTCCAATGCCTCAGTATAGAGGAAATAGCATCCCTCCACTTGTGGACGTTGGAGCAGATGGTAGTTTGTGGAGTGGATCAGGTGAGTCTAATATGGGACATGACAATAACCATTTGATTCGAGGAAACTATTTAGGACAGCACTTTCAGCCAGCTCCTCCTCCCTGGCTGGACCAGCGATTGAACTGTAATATTAATGATGGTCATGCTGCACCCTGGAATCTGTCTCTTCCAATGCCTTATATACAAGCTGTTGATGTTAATGGAAGTCCCTTAGAGGATGCAAGTATGGGTCTGCAGATGCGTCCTGATACAGCTCGAAACAGAAATGGCTTCAGGTTTCCTCATCCTCCTCCTGTTATCCCCCAGCACCATAACTTTCATCATCCAACACCTCCTATGCAAGGAATGAGAGGTCACTCTTTCAGATTTCATCCTACCGCAGTTTCATATAGGGTTCCATCAAATCCTTCACACAGTGCTACAATTCCGCGAAATGATTTTGAGATTGGTGCTAGGCATGTTGAGACTGCACCATCTGCAGGTCTACACAGATACCAACCTCATAGAGAAGCCGTGCGCGAGGCAACTCTAGGACATCAAAATCTTTCTCCTATGCGCTTCTTCCAAGTTGATGATGTTGCCTTGCTTGTCGACCACCACAGAGATATGCGCTTGGACATTGATGAAATGTCTTATGAGGAGCTTCTTGCGTTGGGCGAGCGGATTGGCAATGTAAGCACGGGGTTATCAGAGGAAATGATTACAACTCAAATGAAGATAAAGACTTATTTAGTACCCACAACTGCTATTAATTTGGAGGTTGCTTATGAGGAACAGAAAACTGATTCTTGCACAATATGCCTGGATGAATATCAGAACCGGGAGAAAATTGGGATTCTCAAATGCGGACACGAGTATCATGCAGATTGTTTAAGGAAATGGTTGCTTGTGAAAAATGTGTGCCCCATATGCAAATCAGAAGGATTGACTCCTGGAGGGAAGAGTGTGTAA 1290 0.445 MEQQRRGYFHSDPGIPSSGTNISTPNIHTVATSSGNTTNLDSHFLPVSGAYKRKTAGRIRGNYQHFNASASSSVASPNARYSDGDGMMDIASFPMPQYRGNSIPPLVDVGADGSLWSGSGESNMGHDNNHLIRGNYLGQHFQPAPPPWLDQRLNCNINDGHAAPWNLSLPMPYIQAVDVNGSPLEDASMGLQMRPDTARNRNGFRFPHPPPVIPQHHNFHHPTPPMQGMRGHSFRFHPTAVSYRVPSNPSHSATIPRNDFEIGARHVETAPSAGLHRYQPHREAVREATLGHQNLSPMRFFQVDDVALLVDHHRDMRLDIDEMSYEELLALGERIGNVSTGLSEEMITTQMKIKTYLVPTTAINLEVAYEEQKTDSCTICLDEYQNREKIGILKCGHEYHADCLRKWLLVKNVCPICKSEGLTPGGKSV* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1367 429 SMART ring_2 377 417 IPR001841 -
Lan8g1367 429 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 48 426 - -
Lan8g1367 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 48 426 IPR045191 GO:0061630
Lan8g1367 429 Pfam Ring finger domain 375 418 IPR001841 -
Lan8g1367 429 ProSiteProfiles Zinc finger RING-type profile. 377 418 IPR001841 -
Lan8g1367 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 421 IPR013083 -
Lan8g1367 429 SUPERFAMILY RING/U-box 370 420 - -
Lan8g1367 429 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1367 Lan-Chr8 20515151 20519681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1367 311 422 C3H Transcription Factor Family AT2G15530 53.571 6.07e-36 138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1367 8 20515151 20519681 Lan8g1367 8 20515151 20519681 ECH
Lan8g1367 8 20515151 20519681 Lan13g0587 13 4697066 4701918 LSH
Lan19g0151 19 1341567 1345768 Lan8g1367 8 20515151 20519681 PCT
Lan5g0905 5 22075662 22079787 Lan8g1367 8 20515151 20519681 PCT
Lan9g0260 9 3400548 3404773 Lan8g1367 8 20515151 20519681 PCT
Lan8g1367 8 20515151 20519681 Lan19g0151 19 1341567 1345768 PCT
Lan8g1367 8 20515151 20519681 Lan5g0905 5 22075662 22079787 PCT
Lan8g1367 8 20515151 20519681 Lan9g0260 9 3400548 3404773 PCT