Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1356 ATGGCTCTGGATCCAATCAAGAAGCGTAAGCTCGACGAGAACGGCTTCTCAGTCCCAGATTCCGACATCGTCACTCTCACCACCTCCGACGCCCGCAAAATCATCGAGCGCTTCACCCAGGAACAGCTCCTTGACATCCTACAAGACGCCACCGTCCGCCATCCCGATGTTCTCGCCGCCGTACGCTCCGTCGCTGACACTGATCAGACCCAGCGCAAGCTCTTCATTCGTGGTCTGGGATGGGACACTACCACCGATGGCCTCCGGTCCCTCTTCTCCGCCTACGGCGACCTCGAAGAAGCTGTCGTGATTCTCGACAAGACCACCGGGAAATCTAAGGGCTATGGATTCGTTACTTTCCGCCATGTGGATGGTGCACTCCTTGCATTGAAGGAACCAAGCAAGCGTATTGATGGGCGCGTCACTGTCACTCAGCTTGCTGCGGCTGGGAATTCTGGTAGCACTACCAACACAGCTGATATCGCGCAACGGAAGATTTATGTTGCGAATGTGCCACCGGATCTTCCCGCGGACAAACTTCTCGCACATTTCTCGGTTTATGGAGAGATTGAGGAAGGGCCGTTAGGGTTTGACAAGCAGACTGGAAAATCGAAGGGGTTCGCGCTTTTTGTCTATAAGTCGCCGGAGGGGGCACAAGCAGCGCTGGTAGAACCAGTTAAGAATGTTGAAGGGAGGCAGTTGAATTGCAAACTGGCGATAACGGATGGGAAGCAAGGGAAGCGTGGTGTTGGTGGTGGGCAGGATGGGGTTCAGAATCATGGGAATTCCCATGGGCATGGTGATGGAACAGGGTTAGCTCCACCGTCATCTGTGCCTGGTTCGTATGGTGGTCCAGTTGGTGGTAATGTGGGTTCATATGGTGGGTTTCCAGGGCAGCCTCCAATTGGTGGTCATCCATTGAATTCATCGGCCGGTGGGTTAGGTTCAGTAGCGAACCAGGCACCATCGTCTCTGGGTGCTGGTGGTGGGTATGGGTCTGTTGGTGGTGGTGGTGGATATGGGTCTGTTGGTGGTGGTGGTGGTGGGTATGGGTCTGTTGGTGCTGCTGCTGGTGGGTATGGGTCTGGTCTAGGTAGTCAGTATGGAGGATATGGTGGAGGCCCTGGTTCGGCTGGTTTTGGTGGTGCTGGTGGTTATGGAGGAGTTGGTGCTGGTGCTAATTCCGGTTCTGCTGGTGGACTTGGTGGTGCTGGTGGCCCAGGTGGTGCTTTGGGTGGTGCAGGTTCTTTGTATAGATTGCCGGGTTCGGGTGGAATGCCTGGTGGTGGATATGGAGAGGGTGGACATTATAGTTTATCAGCTTCATCTGGGTACCAGAATCAGCATCACCCTCCTTCTGGAGCCTCACCAGCTCCAAGGGTTCCACCTGGTTCTATGTATCCAAATGTTCCCCCTTACTACTGA 1425 0.5467 MALDPIKKRKLDENGFSVPDSDIVTLTTSDARKIIERFTQEQLLDILQDATVRHPDVLAAVRSVADTDQTQRKLFIRGLGWDTTTDGLRSLFSAYGDLEEAVVILDKTTGKSKGYGFVTFRHVDGALLALKEPSKRIDGRVTVTQLAAAGNSGSTTNTADIAQRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKSPEGAQAALVEPVKNVEGRQLNCKLAITDGKQGKRGVGGGQDGVQNHGNSHGHGDGTGLAPPSSVPGSYGGPVGGNVGSYGGFPGQPPIGGHPLNSSAGGLGSVANQAPSSLGAGGGYGSVGGGGGYGSVGGGGGGYGSVGAAAGGYGSGLGSQYGGYGGGPGSAGFGGAGGYGGVGAGANSGSAGGLGGAGGPGGALGGAGSLYRLPGSGGMPGGGYGEGGHYSLSASSGYQNQHHPPSGASPAPRVPPGSMYPNVPPYY* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1356 474 SUPERFAMILY RNA-binding domain, RBD 64 147 IPR035979 GO:0003676
Lan8g1356 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Lan8g1356 474 MobiDBLite consensus disorder prediction 439 453 - -
Lan8g1356 474 MobiDBLite consensus disorder prediction 455 474 - -
Lan8g1356 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 233 IPR000504 GO:0003723
Lan8g1356 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 141 IPR000504 GO:0003723
Lan8g1356 474 CDD RRM_RBM24_RBM38_like 72 147 - -
Lan8g1356 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 245 IPR000504 GO:0003723
Lan8g1356 474 SMART rrm1_1 165 237 IPR000504 GO:0003723
Lan8g1356 474 SMART rrm1_1 73 145 IPR000504 GO:0003723
Lan8g1356 474 Gene3D - 156 273 IPR012677 -
Lan8g1356 474 Gene3D - 39 155 IPR012677 -
Lan8g1356 474 CDD RRM_RBM24_RBM38_like 164 239 - -
Lan8g1356 474 SUPERFAMILY RNA-binding domain, RBD 155 269 IPR035979 GO:0003676
Lan8g1356 474 MobiDBLite consensus disorder prediction 437 474 - -
Lan8g1356 474 MobiDBLite consensus disorder prediction 243 315 - -
Lan8g1356 474 PANTHER UBP1-ASSOCIATED PROTEIN 2C 3 440 - -
Lan8g1356 474 PANTHER GEO13361P1-RELATED 3 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1356 Lan-Chr8 20375559 20381152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1356 160 239 C2H2 Transcription Factor Family AT2G19380 41.250 4.14e-11 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1356 8 20375559 20381152 Lan8g1356 8 20375559 20381152 ECH
Lan7g0618 7 4853087 4861230 Lan8g1356 8 20375559 20381152 LSH