Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1354 ATGTCAGATTCTGATAAACCCATTTCCGAGTTAGGGCTCGGCTCACTCAGTAACCGCTTCCGTGACTCACTGAGCTGCGATGCTAATAAACCCGATTCCCAAGAACTCGATCTTGGTTCACCTATTTCGACATTGCGGACTCGCCACCATCCTAGTGCAACAGTAACCGCCACCAGTAGTAGTAGTAGTAGTTCCGGTTCATCTGGTTCGGTGTCTGGCCGAACCGGTCTAAACCCGGTTTCCAAGAGCTCCAATTCCGGCGATATTTCCGGTGGTGAGAACAATAGACCCACCGCGGCGGCCGGGAATTTTCCACGGAGCTTCAAATCGGGTTCGAGTTCATCGCAGCCGTTGATATATTCCGGTCAGTCTCATAGATCCCCGTCATCGTCTTCCTCCGCCGTGAACTCGCCGTCGCTGAATGCACTCCCCGCCGGAAACATATACCCCTCCGGTAGAGTTCTTAAATCCAGCATGGCATCGGTATCGGCTAGCCGGAGCTCCAGGCCTGATGTTTTGGGCACCGGCACGGGTAATTATGGCCACGGAAGCATAATGCGGGGCGGCGGCGGCGGCAAAAGTGGCAGTGGAGATGGGATTGCGAATTCGAGAATGAGCGATAGTGAATCAGTGAAGAGAGCAGTGGGGAGTGTGGATCCAGAAGAAGTGAAGAGAGCAGGGAATGAACAATATAAGAGGGGACACTTTGCTGAAGCATTGAGTTTATATGATCGGGCAATCGAATTGTCTCCGGTTAATGCCACTTATTGGAGCAACCGGGCCGCAGCATTGACTGGTTTGGGAAGATTGGGAGAGGCAGTGAGGGAGTGTGAGGAGGCTGTGAGGTTGGATCCTACTTATGGAAGGGCACATCACCGTTTGGCAACTCTTTTTCTAAGGTTAGGACAAGTAGAGAATTCTAGGAAGCACTTATTTTATGCTGGGCTGCAGCCGGATCCTTCCGAGGTTCAGAAGTTGCAAATAGTGGAAAAGCATATCAGCAAATGTGTAGATATGCGGAGGATAGGAGAATGGAAAAGTGTTCTCAGGGAAGTTGATGCTGCTATTGCTACTGGAGTAGACTTTTCTGTTCAGCTAGTTATGTGTAAAGCAGAAGCCCTTTTGAAGCTCCACCAAGTTGATGATGCAGAATCAAGTTTATTACGTATTCCCAAATGGGAATCACATACCATTTCCATGTCGCAGGCAAGATTTTTTGGGATGCTTTCCGAAGCTTATTGCTACTTTGTTAGAGCACAGATTGATATGGCATTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATTGATCAGCGAAATGTTGAAGTTGCTGTTTTGCTCAACAATGTAAGGATGGTGGCCAGAGCTCGAGTGCGTGGCAATGATCTTTTCAAATCAGAAAGATTCACCGAGGCATGCTCGGCATACGGGGAAGGTTTGAGACTGGACCCTTCAAACTCTGTTCTCTATTGCAACAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTCCAATCAAGCTTTACAAATCCTGCCAAATTACAAAAAAGCCCTTCTTCGAAGGGCTGCATCAAATAGCAAGCTAGAACGGTGGGCAGAAGCAGTAAAAGATTACGAGGTCTTGCAGAGAGAACTTCCCGATGACAATGAAATTGCGGAAGCCTTATTTCATGCACACCTTGCACTAAAGAAATTTCGTGGGGAAGAAGTACACAATTTAAAATTTGGTGGTGAAGTGGAGGCCATATCAGATCTCGAGCAGTTTAGAGCTGCAATTTCTTTACCAGGTGTGTCTGTTGTCCATTTTGAAACTGCATCAAACTTACAGTGCAAGCAAATATCACCTTTTGTGGATACACTATGCAGTCGCTATCCATCTATTAACTTCCTCAGGGTGGATATTCAAGAAAACCCAACAGTTGCAACTTCTGAGAATGTTAGGATTGTACCAACCTTCAAGATCTACAAAAATGGCAGCCGAGCAAAGGAAATCGTATGCCCTAGCCGTGATATGTTGGAACACTCCATTAAGCACTACAGCATTTACAACTCATGA 2088 0.4684 MSDSDKPISELGLGSLSNRFRDSLSCDANKPDSQELDLGSPISTLRTRHHPSATVTATSSSSSSSGSSGSVSGRTGLNPVSKSSNSGDISGGENNRPTAAAGNFPRSFKSGSSSSQPLIYSGQSHRSPSSSSSAVNSPSLNALPAGNIYPSGRVLKSSMASVSASRSSRPDVLGTGTGNYGHGSIMRGGGGGKSGSGDGIANSRMSDSESVKRAVGSVDPEEVKRAGNEQYKRGHFAEALSLYDRAIELSPVNATYWSNRAAALTGLGRLGEAVRECEEAVRLDPTYGRAHHRLATLFLRLGQVENSRKHLFYAGLQPDPSEVQKLQIVEKHISKCVDMRRIGEWKSVLREVDAAIATGVDFSVQLVMCKAEALLKLHQVDDAESSLLRIPKWESHTISMSQARFFGMLSEAYCYFVRAQIDMAFGRFENAVTAAEKASQIDQRNVEVAVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALQILPNYKKALLRRAASNSKLERWAEAVKDYEVLQRELPDDNEIAEALFHAHLALKKFRGEEVHNLKFGGEVEAISDLEQFRAAISLPGVSVVHFETASNLQCKQISPFVDTLCSRYPSINFLRVDIQENPTVATSENVRIVPTFKIYKNGSRAKEIVCPSRDMLEHSIKHYSIYNS* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1354 695 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 13 690 IPR044534 -
Lan8g1354 695 Gene3D Glutaredoxin 584 692 - -
Lan8g1354 695 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Lan8g1354 695 SUPERFAMILY Thioredoxin-like 495 692 IPR036249 -
Lan8g1354 695 Pfam Tetratricopeptide repeat 226 286 - -
Lan8g1354 695 MobiDBLite consensus disorder prediction 160 174 - -
Lan8g1354 695 MobiDBLite consensus disorder prediction 16 141 - -
Lan8g1354 695 Pfam Thioredoxin 598 687 IPR013766 -
Lan8g1354 695 MobiDBLite consensus disorder prediction 1 141 - -
Lan8g1354 695 SMART tpr_5 458 491 IPR019734 GO:0005515
Lan8g1354 695 SMART tpr_5 412 445 IPR019734 GO:0005515
Lan8g1354 695 SMART tpr_5 492 525 IPR019734 GO:0005515
Lan8g1354 695 SMART tpr_5 254 287 IPR019734 GO:0005515
Lan8g1354 695 SMART tpr_5 220 253 IPR019734 GO:0005515
Lan8g1354 695 SMART tpr_5 526 559 IPR019734 GO:0005515
Lan8g1354 695 MobiDBLite consensus disorder prediction 160 224 - -
Lan8g1354 695 CDD TRX_family 597 688 - -
Lan8g1354 695 Gene3D Tetratricopeptide repeat domain 218 578 IPR011990 GO:0005515
Lan8g1354 695 SUPERFAMILY TPR-like 220 447 IPR011990 GO:0005515
Lan8g1354 695 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 13 690 - -
Lan8g1354 695 ProSiteProfiles TPR repeat profile. 254 287 IPR019734 GO:0005515
Lan8g1354 695 ProSiteProfiles TPR repeat profile. 492 525 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1354 Lan-Chr8 20342982 20346692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1354 457 528 U-box Gene Family AT3G07370 38.889 1.14e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1354 8 20342982 20346692 Lan8g1354 8 20342982 20346692 ECH
Lan8g1354 8 20342982 20346692 Lan13g0597 13 4826618 4830084 LSH
Lan19g0139 19 1216144 1219976 Lan8g1354 8 20342982 20346692 PCT
Lan5g0885 5 21853020 21856990 Lan8g1354 8 20342982 20346692 PCT
Lan9g0250 9 3259133 3262944 Lan8g1354 8 20342982 20346692 PCT