Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0618 ATGGCTATGCCAATGAGTATCCCTATAGATCCAACCAAGAAACGGAAACTCGAAGAAAACGGTTTCTCCACCGTGGATTCAGATCTCGTCACACTCTCATCCTCTGACGCCCGCAAGATCATTGAGCGTTTCACCCAAGAACAGCTCCATGACATCTTACAAGACGCCACCGTCCGCCACCCCGACGTTCTCGCCGCTGTTCGCTCCGTCGCCGATACAGACCAAACACAGCGCAAGCTCTTCATTCGCGGCCTCGGTTGGGACACAACAACGGATGGCCTCCGGTCTCTTTTCTCCGCTTACGGTGACCTCGAAGAGGCCGTCGTCATCCTCGACAAGGCCACCGGGAAATCAAAGGGCTACGGCTTTGTCACGTTCCGCCACGTCGATGGTGCACTCCTTGCTCTTAAGGAGCCTAGTAAGCGCATTGATGGGCGCGTCACTGTAACGCAGCTAGCTGCGGCTGGGAATTCAGGGAACACTACTAACACAGCAGATATTGCGCAGCGTAAGATTTATGTTGCGAATGTGCCACCGGATCTTCCTGCAGATAAACTTCTTGCACACTTTTCGATATATGGGGAGATTGAGGAGGGGCCGTTAGGGTTTGACAAGCAGACTGGAAAATCAAAGGGTTTCGCGCTTTTTGTGTATAAGTTGCCTGAGGGGGCACAGGCGGCGCTGGTAGAATCAGTGAAGAATGTGGAAGGGAGACAGCTGAACTGTAAACTAGCAATAACAGATGGGAAGCAAGGGAAGCGTGGTGCTGGTGGAGTTGGTGTGCAGGATGGGGTTCAGGGTCATGGGAATGCTCATGGGCATGGTGATGGAATGGGGATGGCTCCACAGTCGTCTGTGCCTGGTTCGTATGGTGGTCCCGTTGGTGGCAATATAAGTTCATATGGTGGTTTTCCAGGTCAGCCTCCGATGGGTGGTCACCCGTTGAATTCATCGGTTGGTTCCTTGGGTTCAGTGGCTAATCAGGCTCCACCGTCATCTCTTGGTGCTGCTGGTGGGTATGGGTCTGGTGGTGGGTATGGGTCTGGTATTGGTGGTCATTATGGAGGATACGGTGGAGGCCCTGGTTCGGCGGGTTTTGGTGGTTCTGGTTATGGAGGAGTTGGTGGCGGTGTTGCTGGTGGTGTGGGTGGTGGTTTAGGAGGCGCAGGTTCTTTGTATAAATTGCCGGGTTCAGGTGGAATACCTGGTGGTGGGTACGGAGAGAGTGGACATTATAGTTTATCAGCTTCATCTGGGTACCAGAATCAGCATCACCCTCCTTCGGGAGCGTCATCAGTACCTAGAGTTCCACCCGGTTCTATGTATCCAAATGTTCCTCCTTATTACTGA 1350 0.5296 MAMPMSIPIDPTKKRKLEENGFSTVDSDLVTLSSSDARKIIERFTQEQLHDILQDATVRHPDVLAAVRSVADTDQTQRKLFIRGLGWDTTTDGLRSLFSAYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALKEPSKRIDGRVTVTQLAAAGNSGNTTNTADIAQRKIYVANVPPDLPADKLLAHFSIYGEIEEGPLGFDKQTGKSKGFALFVYKLPEGAQAALVESVKNVEGRQLNCKLAITDGKQGKRGAGGVGVQDGVQGHGNAHGHGDGMGMAPQSSVPGSYGGPVGGNISSYGGFPGQPPMGGHPLNSSVGSLGSVANQAPPSSLGAAGGYGSGGGYGSGIGGHYGGYGGGPGSAGFGGSGYGGVGGGVAGGVGGGLGGAGSLYKLPGSGGIPGGGYGESGHYSLSASSGYQNQHHPPSGASSVPRVPPGSMYPNVPPYY* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0618 449 MobiDBLite consensus disorder prediction 412 449 - -
Lan7g0618 449 SUPERFAMILY RNA-binding domain, RBD 163 278 IPR035979 GO:0003676
Lan7g0618 449 MobiDBLite consensus disorder prediction 412 429 - -
Lan7g0618 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 155 IPR000504 GO:0003723
Lan7g0618 449 CDD RRM_RBM24_RBM38_like 170 245 - -
Lan7g0618 449 Gene3D - 42 163 IPR012677 -
Lan7g0618 449 Gene3D - 164 281 IPR012677 -
Lan7g0618 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 247 IPR000504 GO:0003723
Lan7g0618 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 239 IPR000504 GO:0003723
Lan7g0618 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 147 IPR000504 GO:0003723
Lan7g0618 449 PANTHER UBP1-ASSOCIATED PROTEIN 2C 9 414 - -
Lan7g0618 449 PANTHER GEO13361P1-RELATED 9 414 - -
Lan7g0618 449 SMART rrm1_1 171 243 IPR000504 GO:0003723
Lan7g0618 449 SMART rrm1_1 79 151 IPR000504 GO:0003723
Lan7g0618 449 SUPERFAMILY RNA-binding domain, RBD 69 154 IPR035979 GO:0003676
Lan7g0618 449 MobiDBLite consensus disorder prediction 268 326 - -
Lan7g0618 449 CDD RRM_RBM24_RBM38_like 78 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0618 Lan-Chr7 4853087 4861230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0618 166 340 C2H2 Transcription Factor Family AT2G19380 30.500 5.57e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0618 7 4853087 4861230 Lan8g1356 8 20375559 20381152 LSH