Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0905 ATGGATCAGACGACAGATTCGGAAATGGATCAACAAAATCAAGGATATTTTCACTCTGAACCCTGTATCGTTTTGAGAGGCTCCGCGAGTTCCTCACATCCGAATATCCGCACAATGGTGTCAGCTTCAGGGAACACAACTAATGTTGCTTCCTACTATTTACAAGATGCTTATGACAATACTAGGGGGTATGGGTTGGCACAGTACAATGGCATTCAGCCTCAACATAATCTTGACATGGGTGGTGCACCGGCAGCCAACATATATTATTCTGGCATGAATCCTTCTTCTAGTACTGGTGTATTTACCCCTTTGGCTCTAAATCACCAAGCCTCTGATCAGTTGCCAGGTTCAAGCGCATTTGCAGTCTCCGGAAGTTCTTCAGATAATTTTGGAAGAAGCAGTGCTTTCATGGATGACGTCAGAGCTCCATACAAACGGAAAGTTGCTGAAGGTATCAGAGGAAATCACCAGTATTTTAATGCTCCAGCTAGTTCTTCTGTTGCTCCCCCTAATGCAAGACTTGTGGAAGTAGGACCACACGGTAGTGCATGGAACAGGTCAAGTGAGCCTATTATGGTGCATGACCACAATCATTTGATTCGTGGAAATTATTTAGGGCAGCACTTTCTGCCAGCTCCTCCTCCATGGTTTGAGCAGCAGTTGAACAATGATGGCCATACCACCGCCTGGAATCAACCTCTTCCAATGCCTTATATGCAAGCACCAAATGTTAATGGAAGTTCATTAGAGAATGCAAGTATGGGTTTGCAGAGATATCATGATACATCCAGCAACAGAAATGGCCTCAGGTTTCCTCATCCCTCTCCTGCCAACCATCCACACCATAATTATCATCATCCTGCGCTACCTATGCAAGGAGTAAGAGGGCACAATATACACTTTCACCCTCCGGTAACTGCAGCTTCATTTAGGGTTCCTACAAATCCTTCTCGCAGTGCCATGATCCCTGCACAGACTGGTTTTGAGATGGTTCCTAGGCATGTTGGCCCTGCTCCGTCAGCAGGCCTACGGATATATCGACCTCATAGAGCAATCATGCCCGATGCAACTCTCGGACACAGAAATCTCCCCTCCATGGGATTTCTCCAAGTGGATGATGTTGCTTTGATCGATGAAGTCGGAAATTTGGTTGACCATCACAGAGATATGCGCTTGGACATAGAGGATATGTCGTATGAGGATCTTCTTGCATTGGGTGAGCGGATTGGCAAAGTAAGCACCGGTTTATCAGAGGAAACAATTACAGCTCAACTGAAGACAAAGACCTATTTAGCACCCGCTACCGCTATTAATTTGGAGGAGCTACCTTCTGACAATCAGGAATCCGATTCGTGCATAATATGTCAGGACGAATATAAGGACCAAGATAAGATTGGAGTTCTTCGATGTGAGCACGAGTATCATGCAGATTGCTTAAAGAAATGGTTGCTTGTCAAAAATGTATGCCCAATATGCAAATCAGAAGCCTAG 1494 0.4511 MDQTTDSEMDQQNQGYFHSEPCIVLRGSASSSHPNIRTMVSASGNTTNVASYYLQDAYDNTRGYGLAQYNGIQPQHNLDMGGAPAANIYYSGMNPSSSTGVFTPLALNHQASDQLPGSSAFAVSGSSSDNFGRSSAFMDDVRAPYKRKVAEGIRGNHQYFNAPASSSVAPPNARLVEVGPHGSAWNRSSEPIMVHDHNHLIRGNYLGQHFLPAPPPWFEQQLNNDGHTTAWNQPLPMPYMQAPNVNGSSLENASMGLQRYHDTSSNRNGLRFPHPSPANHPHHNYHHPALPMQGVRGHNIHFHPPVTAASFRVPTNPSRSAMIPAQTGFEMVPRHVGPAPSAGLRIYRPHRAIMPDATLGHRNLPSMGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGKVSTGLSEETITAQLKTKTYLAPATAINLEELPSDNQESDSCIICQDEYKDQDKIGVLRCEHEYHADCLKKWLLVKNVCPICKSEA* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0905 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 415 497 IPR013083 -
Lan5g0905 497 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 130 497 - -
Lan5g0905 497 Pfam Ring finger domain 451 494 IPR001841 -
Lan5g0905 497 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 130 497 IPR045191 GO:0061630
Lan5g0905 497 SUPERFAMILY RING/U-box 445 496 - -
Lan5g0905 497 MobiDBLite consensus disorder prediction 260 288 - -
Lan5g0905 497 ProSiteProfiles Zinc finger RING-type profile. 453 494 IPR001841 -
Lan5g0905 497 SMART ring_2 453 493 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0905 Lan-Chr5 22075662 22079787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0905 370 497 C3H Transcription Factor Family AT2G15530 46.269 3.60e-36 140
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0151 19 1341567 1345768 Lan5g0905 5 22075662 22079787 LSH
Lan5g0905 5 22075662 22079787 Lan9g0260 9 3400548 3404773 LSH
Lan5g0905 5 22075662 22079787 Lan8g1367 8 20515151 20519681 PCT
Lan5g0905 5 22075662 22079787 Lan13g0587 13 4697066 4701918 PCT
Lan8g1367 8 20515151 20519681 Lan5g0905 5 22075662 22079787 PCT
Lan13g0587 13 4697066 4701918 Lan5g0905 5 22075662 22079787 PCT