Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0885 ATGTCGCATTCAGGTAACCCCATTTCCGATGTGGTTGGGTTTGTGTCGAACGACTCGATAACCGATCGTTTCCGTGACTCAGTGAACTGTGGCGAGTTCAACAAGCCTGATTTCAGAGAACTCGATCTGGGTTCACCCATTTCACCATTACGAACCCGTGCACCTGGGTCTGGACCCGTTGCTAGTAGTAGTTCAAGTTCTTCTGGATCTTTTTCTGGAGGTAGAACTGGGAAAAATTTGGTTCCTAAAAGATCTGAATCTGCACCTGCTATTTGTAATACTAACAACTCCGGTGAGCTTTCCGGTTCCGGTGAGAATAGTCCGAGCAATGCTCGTGGCGGAAGCGGTTCTAAATCGGGTCATGCAAGATCCGATTCAGGAACCGCTGCCCCGTTAATTTACTCCGGCCAGAGTGTGAATTCGCCGGTTTTGAATGTGCTTCCTACTGGAAACATATGCCCCTCTGGCCGGATCGTGAAGACTGGGATGACCGTGAATCGCGGCTCGAGGAGCGATGTTTTGGGAATGGGTACGGGGAATTATGGCCATGGGAGCATAATGCGGGGTGGGAAAGAGGTTTTGGGTGTGGGGAATGTGAAGGGTGTTGGGATTGGGAGTACTGAGATGGTGAAGAAAGGAGTGCAGAGTTTGGATCCGGAGGAGTTGAAGAGATTAGGGAATGAGAATTATAAGAGGGGGCATTTTGTGGAGGCATTGAGTTTGTATGATCGGGCTATTTCGTTGTCTCCGGGGAGTGCCGCTTATCGGAGCAACCGTGCTGCGGCGTTGACGGGGTTAGGAAGGTTGGTGGAAGCAGTGAGGGAGTGTGAGGAGGCTGTGAAGTTGGATCCTAATTATGTCAGGGCTCATCACCGTTTAGCAACTCTTTTCCTCAGGCTAGGACAAGTTGAGAATGCTAGGCAGCATTTATCTCATCCTGGGTTGCATCCGGATCCGTCTCAGATGCAGAAGTTGCAAATGGTGGAAAAACATATAAGCAAATGTGCAGATGTAAGGAGGGTAGGAGATTGGAGAAGTGTTTTGAGGGAAGTTGATGCTGCTATTGCTGCTGGAGCCGACTCTTGTCCTCAGCTCTTTATGTGTAGAGCTGAAGCCCTTTTGAAGCTCCATCAAATTGATGATGCAGAATCAATATTATTGCAATCTCTCAAATCAGAACGGCATACTAGTACCTCATCAGAAGCAAGATTTTTTGGGATGATTTCTGAGGCTTATTCCTACTTTATCAGAGCTCAGATTGAGTTGGCCTTGGGAAGGTTTGAGAATGCAGTTACGGCAGCAGAGAAAGCCAGTCAGATTGACTCCCGAAATGTTGAAGTTGCTGTCTTGCTCAACAATGTAAGGATGGTAGCAAGAGCTCGAGTGCATGGCAACAATCTTTTTAAATCTGAAAGGTTCACTGAAGCTTGCTCGGCATATGGGGAAGGTTTGAAGCTGGACCCTTCAAATTCCGTTTTATATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGACAATGGGAAAGATCAATTGAAGATTCCAATCAAGCATTACTTATCCAACCAAATTACACAAAAGCCCTTCTTCGAAGGGCAGCTTCAAACAGCAAGCTTGAAAAGTGGGAAGAAGCTGTGAAAGATTATGAGGTCCTGCGGAGAGAACTTCCAAACGACAATGAAGTTGCAGAAGCTCTTTTTCATGCACAAGTTGCACTGAAGAAATCGCGTGGGGAAGAAGTATGCAATTTAAAATTTTGTGGTGAAGTGGAAGAAGTATCAGGTCTTGAGCAGTTTAGAGCCGCAATATCTTTACCAGGTGTGTATGTTGTTCATTTTAAAATTGCATCGAATTCGCAATGCAAGCAAATATCGCCATACGTTGATACACTATGTGGTCAGTATCCATCGATTAAATTCCTCAAGGTGGATATTCAAGAATGTCCAACAATTGCCACTGCTGAGAATGTTAGGATTGTGCCAACCTTCAAGATATACAAAAACGGAAATCGAGTGAAGGAAATCGTATGCCCTAGTCGTGATATGTTGGAACACTCTGTGAGGCATTACAGCTTATAG 2076 0.4562 MSHSGNPISDVVGFVSNDSITDRFRDSVNCGEFNKPDFRELDLGSPISPLRTRAPGSGPVASSSSSSSGSFSGGRTGKNLVPKRSESAPAICNTNNSGELSGSGENSPSNARGGSGSKSGHARSDSGTAAPLIYSGQSVNSPVLNVLPTGNICPSGRIVKTGMTVNRGSRSDVLGMGTGNYGHGSIMRGGKEVLGVGNVKGVGIGSTEMVKKGVQSLDPEELKRLGNENYKRGHFVEALSLYDRAISLSPGSAAYRSNRAAALTGLGRLVEAVRECEEAVKLDPNYVRAHHRLATLFLRLGQVENARQHLSHPGLHPDPSQMQKLQMVEKHISKCADVRRVGDWRSVLREVDAAIAAGADSCPQLFMCRAEALLKLHQIDDAESILLQSLKSERHTSTSSEARFFGMISEAYSYFIRAQIELALGRFENAVTAAEKASQIDSRNVEVAVLLNNVRMVARARVHGNNLFKSERFTEACSAYGEGLKLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALLIQPNYTKALLRRAASNSKLEKWEEAVKDYEVLRRELPNDNEVAEALFHAQVALKKSRGEEVCNLKFCGEVEEVSGLEQFRAAISLPGVYVVHFKIASNSQCKQISPYVDTLCGQYPSIKFLKVDIQECPTIATAENVRIVPTFKIYKNGNRVKEIVCPSRDMLEHSVRHYSL* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0885 691 Gene3D Tetratricopeptide repeat domain 218 577 IPR011990 GO:0005515
Lan5g0885 691 CDD TRX_family 596 683 - -
Lan5g0885 691 Pfam Tetratricopeptide repeat 412 442 IPR019734 GO:0005515
Lan5g0885 691 SUPERFAMILY Thioredoxin-like 494 689 IPR036249 -
Lan5g0885 691 MobiDBLite consensus disorder prediction 88 129 - -
Lan5g0885 691 Pfam Thioredoxin 596 682 IPR013766 -
Lan5g0885 691 SUPERFAMILY TPR-like 218 446 IPR011990 GO:0005515
Lan5g0885 691 SMART tpr_5 525 558 IPR019734 GO:0005515
Lan5g0885 691 SMART tpr_5 253 286 IPR019734 GO:0005515
Lan5g0885 691 SMART tpr_5 491 524 IPR019734 GO:0005515
Lan5g0885 691 SMART tpr_5 219 252 IPR019734 GO:0005515
Lan5g0885 691 SMART tpr_5 411 444 IPR019734 GO:0005515
Lan5g0885 691 SMART tpr_5 363 396 IPR019734 GO:0005515
Lan5g0885 691 SMART tpr_5 458 490 IPR019734 GO:0005515
Lan5g0885 691 MobiDBLite consensus disorder prediction 57 75 - -
Lan5g0885 691 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 19 689 - -
Lan5g0885 691 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Lan5g0885 691 Pfam Tetratricopeptide repeat 276 308 - -
Lan5g0885 691 Gene3D Glutaredoxin 584 690 - -
Lan5g0885 691 MobiDBLite consensus disorder prediction 26 129 - -
Lan5g0885 691 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 19 689 IPR044534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0885 Lan-Chr5 21853020 21856990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0885 456 601 U-box Gene Family AT3G07370 28.962 1.12e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0139 19 1216144 1219976 Lan5g0885 5 21853020 21856990 LSH
Lan5g0885 5 21853020 21856990 Lan9g0250 9 3259133 3262944 LSH
Lan5g0885 5 21853020 21856990 Lan8g1354 8 20342982 20346692 PCT
Lan5g0885 5 21853020 21856990 Lan13g0597 13 4826618 4830084 PCT