Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0884 ATGGCCAACACTAATCTCCCTCGAAGAATCATCAAGGAAACGCAGCGTTTACTCAGTGAACCAGCGCCTGGAATTAGCGCTTCGCCTTCAGAAGACAATATGCGCTATTTCAATGTGATGATCCTTGGTCCAAGCCAGTCACCTTATGAAGGAGGGGTTTTCAAGTTAGAACTATTTTTGCCAGAAGAATATCCAATGGCTGCTCCAAAGGTTAGGTTTCTGACAAAAATATATCATCCAAACATTGATAAGCTTGGCAGGATATGTCTTGATATTCTGAAAGATAAGTGGAGTCCTGCCCTTCAGATACGCACTGTACTTTTGAGTATTCAAGCCCTTTTAAGTGCACCAAACCCAGATGATCCACTTTCTGAGAACATTGCTAAGCATTGGAAAAGTAATGAGGCTGAGGCTGTTGAAACAGCAAAGGAATGGACCCGAGTATATGCTAGTGGCGCCTGA 462 0.4329 MANTNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRVYASGA* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0884 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Lan5g0884 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
Lan5g0884 153 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Lan5g0884 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 2 150 - -
Lan5g0884 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 150 - -
Lan5g0884 153 Pfam Ubiquitin-conjugating enzyme 9 145 IPR000608 -
Lan5g0884 153 SMART ubc_7 8 151 - -
Lan5g0884 153 SUPERFAMILY UBC-like 7 151 IPR016135 -
Lan5g0884 153 CDD UBCc 7 146 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0884 Lan-Chr5 21841952 21845844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0884 8 118 Miscellaneous Gene Families AT3G17000 29.060 6.98e-12 60.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0138 19 1209014 1213070 Lan5g0884 5 21841952 21845844 LSH
Lan5g0884 5 21841952 21845844 Lan7g0621 7 4882051 4886358 PCT
Lan5g0884 5 21841952 21845844 Lan8g1353 8 20334112 20339641 PCT
Lan5g0884 5 21841952 21845844 Lan13g0598 13 4832626 4837814 PCT
Lan7g0621 7 4882051 4886358 Lan5g0884 5 21841952 21845844 PCT
Lan8g1353 8 20334112 20339641 Lan5g0884 5 21841952 21845844 PCT
Lan13g0598 13 4832626 4837814 Lan5g0884 5 21841952 21845844 PCT