Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0882 ATGGCAAGCAATAGGAACATGGAAAAGATGGCATCTATTGATGCACAACTTAGACAATTGGCTCCAGCCAAAGTGAGTGAGGATGATAAATTGATTGAGTATGATGCTCTACTTCTGGATCGGTTCCTTGATATTCTTCAGGATTTACATGGGGAGGATCTGAAGGACACAGTTCAAGAAGTATATGAGCTTTCTTCTGAGTATGAAGGAAAGCATGACCCTAAGAAACTGGAAGAAATTGGAAATGTCATAACTAGTTTGAATGCTGGAGACTCTATTGTTGTGGCCAAATCGTTTTCTCATATGCTTAACTTGGCCAACTTAGCTGAAGAGGTCCAGATTTCTCACCGCAGACGAAACAAGTTGAAGAAAGGAAATTTTGCAGATGAGACTAATGCAACTACAGAATCAGACATTGAAGAAACTCTCAAGAGACTTGTGTTTGATTTGAAGAAGTCTCCTCAGGAAGTTTTTGATGCACTGAAAAGCCAAACTGTTGATCTGGTTCTTACTGCTCATCCAACTCAATCGATTCGTAGATCTTTGCTTCAAAAGCATGCTAGGATACGAGATTGTTTATCTCATTTGTATGCCAAAGATATAACTCCTGATGATAAGCAAGAGCTCGATGAGGCTCTACAGAGGGAGATTCAAGCTGCTTTCCGTACTGATGAAATCAAGAGGACTCCTCCAACACCACAAGATGAGATGAGAGCTGGGATGAGCTATTTCCATGAAACAATTTGGAAGGGTGTCCCGAAATTTCTACGCCGTGTTGACACTGCTTTGAAGAATATTGGGATTAACGAGTGCATTCCTCATAACGCTCCCGTTATTCAATTTTCTTCTTGGATGGGTGGTGATCGCGATGGTAATCCAAGAGTAACTCCTGAAGTGACAAGGGATGTTTGCTTGTTGGCTAGAATGATGGCTGCTAATATGTATTATTCCCAGATAGAAGATCTCATGTTTGAACTGTCTATGTGGCGTTGCAGCGACGAGCTACGCAATCGTGCAGAAGAACTTCACAGGTCTTCCAATAAAGATGAAGTTGCAAAACACTATATAGAGTTTTGGAAAAAGGTTCCGCCAAATGAACCATATCGTGTAGTACTGGGTGAAGTACGGGACAGACTCTATCAGACTCGTGAACGTTCTCGCCATTTGCTAGCTCATGGGTACTCTGACATTCCAGAGGAAGCAACTTTCACCAATGTTGAAGAGTTCCTGGAACCTCTTGAAGTTTGTTATAGATCGCTTTGTGCTTGTGGTGATCGTCCAATTGCTGATGGAAGCCTTCTTGATTTCTTGAGGCAAATATCCACATTTGGACTGTCACTTGTGAGGCTTGATATCAGGCAAGAGTCAGACCGTCACACGGATGTGATGGATGCCATTACCAAACATCTCGAAATAGGCTCCTACCTGGAATGGTCTGAAGAAAAAAGACAAGAATGGCTTTTGTCTGAATTGAGCGGTAAAAGGCCACTTTTTGGACCTGACCTTCCCAAAACAGAAGAAATTAGAGATGTTTTGGACACATTTCATGTCCTAGCAGAACTACCACCAGACAACTTTGGAGCATATATCATATCAATGGCAACTGCACCATCTGATGTGCTAGCCGTTGAACTTCTGCAGCGCGAATGCCATATCAAGCATCCATTAAGAGTTGTCCCGTTGTTTGAGAAGCTTGCAGATCTTGAGGCTGCTCCTGCTGCTTTGGCGAGGTTGTTCTCAATAGATTGGTACAGAAATAGGATTAATGGGAAGCAAGAAGTCATGATCGGGTATTCCGATTCAGGAAAAGACGCTGGAAGGTTCTCTGCGGCATGGCAGTTATACAAGGCTCAAGAGGAACTTATAAAAGTAGCTAAGGAATTCGGTGTTAAGCTAACCATGTTCCATGGTCGCGGTGGAACTGTTGGAAGAGGTGGTGGTCCAACTCACCTTGCTATCCTGTCTCAACCTCCAGACACAATCCACGGTTCACTTCGTGTAACGGTCCAAGGTGAAGTTATTGAGCAATCATTTGGAGAGCAGCACTTGTGCTTTAGAACACTTCAACGTTATACTGCTGCCACTTTAGAACATGGAATGAATCCTCCAATTTCTCCAAAACCAGAATGGCGAGCGTTGATGGACCAGATGGCAGTCATTGCCACTGAGGAATACCGTTCTATTGTTTTCAAGGAAGCACGCTTTGTTGAGTATTTCCGCCTGGCTACACCTGAGTTAGAGTATGGCCGGATGAACATCGGAAGTCGACCCGCAAAGCGAAGGCCTACTGGAGGCATTGAAACACTCCGCGCAATACCTTGGATCTTTGCATGGACACAGACAAGGTTTCATCTTCCAGTGTGGCTAGGCTTTGGAGCAGCATTTAAACAGGTTATTGAGAAAGATGTTAGGAATCTTCACATGCTGCAAGAAATGTACAATCAATGGCCTTTCTTTAGGGTCACCATTGATTTAGTGGAAATGGTGTTTGCCAAGGGAGACCCAGGAATAGCTGCACTGAATGATAGACTCCTTGTTTCAAAGGATCTATGGCCATTTGGGGAGCAGTTGAGGAAAAAATATGAAGAAACTAAGAATCTTCTCCTTCAGGTGGCTACACACAAGGATCTTCTTGAAGGAGACCCCTATTTGAAGCAAAGACTTAGGCTGCGTCATTCTTACATTACTACCCTAAATGTTTTCCAAGCTTACACATTGAAACGCATCCGTGATCCAAACTTTAACGTGCCGCCGCGCCCTCATATCTCGAAAGACTCATTGGAGAAAAGTACATCAGCTACTGAACTTGTATTACTGAACCCAACAAGTGAATATGCCCCTGGTTTGGAAGACTCCCTCATTCTCACAATGAAGGGTATTGCTGCTGGCATGCAGAACACTGGTTAA 2907 0.4352 MASNRNMEKMASIDAQLRQLAPAKVSEDDKLIEYDALLLDRFLDILQDLHGEDLKDTVQEVYELSSEYEGKHDPKKLEEIGNVITSLNAGDSIVVAKSFSHMLNLANLAEEVQISHRRRNKLKKGNFADETNATTESDIEETLKRLVFDLKKSPQEVFDALKSQTVDLVLTAHPTQSIRRSLLQKHARIRDCLSHLYAKDITPDDKQELDEALQREIQAAFRTDEIKRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINECIPHNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYYSQIEDLMFELSMWRCSDELRNRAEELHRSSNKDEVAKHYIEFWKKVPPNEPYRVVLGEVRDRLYQTRERSRHLLAHGYSDIPEEATFTNVEEFLEPLEVCYRSLCACGDRPIADGSLLDFLRQISTFGLSLVRLDIRQESDRHTDVMDAITKHLEIGSYLEWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIRDVLDTFHVLAELPPDNFGAYIISMATAPSDVLAVELLQRECHIKHPLRVVPLFEKLADLEAAPAALARLFSIDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRYTAATLEHGMNPPISPKPEWRALMDQMAVIATEEYRSIVFKEARFVEYFRLATPELEYGRMNIGSRPAKRRPTGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKQVIEKDVRNLHMLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALNDRLLVSKDLWPFGEQLRKKYEETKNLLLQVATHKDLLEGDPYLKQRLRLRHSYITTLNVFQAYTLKRIRDPNFNVPPRPHISKDSLEKSTSATELVLLNPTSEYAPGLEDSLILTMKGIAAGMQNTG* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0882 968 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 169 180 IPR018129 -
Lan5g0882 968 PRINTS Phosphoenolpyruvate carboxylase signature 168 181 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan5g0882 968 PRINTS Phosphoenolpyruvate carboxylase signature 221 237 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan5g0882 968 PRINTS Phosphoenolpyruvate carboxylase signature 281 296 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan5g0882 968 PRINTS Phosphoenolpyruvate carboxylase signature 443 463 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan5g0882 968 PRINTS Phosphoenolpyruvate carboxylase signature 592 612 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan5g0882 968 PRINTS Phosphoenolpyruvate carboxylase signature 634 663 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan5g0882 968 PRINTS Phosphoenolpyruvate carboxylase signature 766 792 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan5g0882 968 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 34 968 IPR015813 GO:0003824
Lan5g0882 968 Hamap Phosphoenolpyruvate carboxylase [ppc]. 24 968 IPR022805 GO:0006099|GO:0008964|GO:0015977
Lan5g0882 968 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 594 606 IPR033129 -
Lan5g0882 968 Gene3D Phosphoenolpyruvate/pyruvate domain 309 446 - -
Lan5g0882 968 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 3 968 - -
Lan5g0882 968 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 3 968 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan5g0882 968 Pfam Phosphoenolpyruvate carboxylase 36 968 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0882 Lan-Chr5 21829808 21836675 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0136 19 1197883 1203495 Lan5g0882 5 21829808 21836675 LSH
Lan5g0882 5 21829808 21836675 Lan7g0622 7 4888659 4894436 PCT
Lan5g0882 5 21829808 21836675 Lan8g1351 8 20319490 20325076 PCT
Lan5g0882 5 21829808 21836675 Lan13g0601 13 4859967 4865777 PCT