Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0151 ATGGATCAGATAACGGATTCGGAAATGGATCAACAGAGGCAAGGATATTTCCATTCTGAGCCCGGTATCGTTTCGAGAGGCTCGGCGAGTACCTCACAGCCGAATATCCGCACAAGAGTGGCAGCTTCAGGGACCACAACTAATGTCAATTCGTACTATTTACAAGATGCTTATGACAATACTGGGGTGTATGGCTTGGCACAATACAATGGCATTCAGCCTCAACATAATCTTGACATGGGTGGTGCTGCTGCTGCAGCCAACATATATTATTCCGACATGAATCCTCCTTCTAGTACTGGCGTATTTACCACTTTACCTCCAAATCACCAAGCCTCTGATCAATTGCCTGGTTCGAGCGCATTTGCGATCTCTGGAGGTTCTTCAGATAGTTTTGGAAGAAACAACAGCTTTGTGGATGATGTCAGAGGTCCATACAAAAGGAAAATTGCTGAAGGGATAAGAGGAAATCATCAGTATTTTAATGCTTCAGCTAGTTCTTCCATCGCTCCCCCTAATGCGAGACAAGCCGATGGGATTGCTATGGACACTGCATCATTTTCCTTGCACATGCCATCACTTGTGGAAGTAGGACAACATGGCAGTGGATGGAACAGGTCAGGTGAGTCTATTATGGTGCATGACCACAACCATTTGATTCGAGGAAACTACTTAGGTCAGCACTTTCCGCCAGCTCCTCCTCCATGGTTTGACCAGCAGTTAAACAATGATGGCCATACTATAGTCTGGAATCAGCCTCATCCAATGCCTTATATGCAAGCACCAAATGTTAATGGAAGTTCAATTGTTAATGGAAGTCCAATTGTTAATGGAAGCCCATTGGAGAATGCAAGTATGGGTTTGCAGAGATATCATGATACATCCAACAACAGAAATGGCCTCAGGTTTCCTCATCCCCCTCCTGCCAACCACCCACACCATAATTATCATCATCCGGCACTACCTATGCAAGGAGTAAGAGGTCATGCTATCAACTTTCACCCTCCGGTAACTGCAGCTCCATTTAGAGTTCCTACAAATCCTTCACGCGGTGCTGTGATCCCCCCACAGACTGGTTTTGAGATGATTCCAAGGCATGCTGGTCCTGTACCATCAGCAGGCCTAAGGATATACCGACCTCACAGAGCAATCATGCCCGATACAACTCTTGGACATAGAAATTTTCCCCCCATGGGCTTTCTCCGAGTTGATGATGGTGCTTTAATTGACGAAGTAGGAAATTTGGTTGACCATCACAGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTTCTTGCATTGGGTGAGCGGATTGGCAAAGTAAGCACTGGTTTGTCAGAGGAAACGATTACAGCTCAATTGAAGACGAAGACTTATTTAACACCTGCTACCGTTATTAATTTGGAGGAGGAAGTTTCTGATGATCAGGAATCTGAATCTTGTATGATATGTCAGGATGAATATAAGGACGAAGAGAAGATTGGAGTTCTTCGATGTGAGCATGAATATCACGCAGATTGCTTAACGAAATGGTTGCTCGTCAAAAATGTCTGTCCTATATGCAAATCAGAAGCCTTGACTACTGAAATGAAGGACATATAA 1611 0.4438 MDQITDSEMDQQRQGYFHSEPGIVSRGSASTSQPNIRTRVAASGTTTNVNSYYLQDAYDNTGVYGLAQYNGIQPQHNLDMGGAAAAANIYYSDMNPPSSTGVFTTLPPNHQASDQLPGSSAFAISGGSSDSFGRNNSFVDDVRGPYKRKIAEGIRGNHQYFNASASSSIAPPNARQADGIAMDTASFSLHMPSLVEVGQHGSGWNRSGESIMVHDHNHLIRGNYLGQHFPPAPPPWFDQQLNNDGHTIVWNQPHPMPYMQAPNVNGSSIVNGSPIVNGSPLENASMGLQRYHDTSNNRNGLRFPHPPPANHPHHNYHHPALPMQGVRGHAINFHPPVTAAPFRVPTNPSRGAVIPPQTGFEMIPRHAGPVPSAGLRIYRPHRAIMPDTTLGHRNFPPMGFLRVDDGALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGKVSTGLSEETITAQLKTKTYLTPATVINLEEEVSDDQESESCMICQDEYKDEEKIGVLRCEHEYHADCLTKWLLVKNVCPICKSEALTTEMKDI* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0151 536 CDD RING-H2_PA-TM-RING 484 525 - -
Lan19g0151 536 ProSiteProfiles Zinc finger RING-type profile. 484 525 IPR001841 -
Lan19g0151 536 Pfam Ring finger domain 483 525 IPR001841 -
Lan19g0151 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 529 IPR013083 -
Lan19g0151 536 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 132 533 - -
Lan19g0151 536 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 132 533 IPR045191 GO:0061630
Lan19g0151 536 SMART ring_2 484 524 IPR001841 -
Lan19g0151 536 SUPERFAMILY RING/U-box 478 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0151 Lan-Chr19 1341567 1345768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0151 401 531 C3H Transcription Factor Family AT2G15530 47.059 2.43e-36 142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0151 19 1341567 1345768 Lan5g0905 5 22075662 22079787 LSH
Lan19g0151 19 1341567 1345768 Lan9g0260 9 3400548 3404773 LSH
Lan19g0151 19 1341567 1345768 Lan8g1367 8 20515151 20519681 PCT
Lan19g0151 19 1341567 1345768 Lan13g0587 13 4697066 4701918 PCT
Lan8g1367 8 20515151 20519681 Lan19g0151 19 1341567 1345768 PCT
Lan13g0587 13 4697066 4701918 Lan19g0151 19 1341567 1345768 PCT