Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0139 ATGTCACATTTCGGTAACCCCATTTCCGATGTAGTCGAGTTCAACAAGCCAGATTTCCGAGAACTCGATCTGGGTTCACCCGTTTCACTATTACGGAACCGTGGACCCGCTGTAAGTACTAGCTCAAGTTCCTCTGGATCCTTCTCCGGTGGAAGAATCGTGCAAAACCCAGTTCCCAAAAGATCTGAATCAGCACCTACTATTACTAATACCAACCACTCCGGTGAACTTTCCGGTTCAACTGAGACTAGTCCAACTAATGCACGTGGTGGCAGTGGTTCTAAACCGGGTCATGTAAGATCCAATTCTGGAACATCTGCACCGTTAATCTATTCCGGTCAGAGTGTGAATTCGCCGGTTTTGAATGTGCTACCCACTGGAAACATTTGCCCGTCGCGCCGGATTGTTAGAACCGGCATGGCGGCAAATCGGAGCACAAGGAGTGATGTATTGGGCACTGGCACTGGGAATTATGGCCATGGGAGCATAATGCGTGGTGGGAAAGAGGTTTCGGGTTCGGGGAATGGGAATGAGATTGTGAAGAGAGGGGTGCAGAGTTTGGATCCGGAGGAGTTGAAGAGAGTAGGGAATGAGCATTACAAAAGGGGGAATTTTTTGGAGGCTTTGAGTTTGTATGATAAGGCAATTGCCTTGTCTCCGGGGAGTGCGGCTTACCGGAGTAACCGAGCCGCGGCCTTGATGGGTTTAGGAAGGTTGGTTGAGGCAGTGAGGGAGTGTGAGGAGGCTGTGAGTTTGGATCCTAATTATGGCAGGGCTCATTATCGTTTGGCAACTCTTTTCATCAGGCTAGGTCAAGTTGAGAATGCCAGGAAGCATTTATGTCATCCTCGGGTGCAGTCGGATCCGTCTGAGAAGCATAAGTTGCAAATGGTGGAAAAACATATAAGCAAATGCGCAGAAGGAAGGAGGATAGGAGATTGGAAAAGTGTTCTGAGGGAAGTTGATGCTGCTATTGCTTCTGGAGCGGACTCTTCTCCTCAGCTCTTTATGTGTAGAGCTGAAGCCCTTTTGAAGCTCCACCAAATTGATGATGCAGTCTCGATTTTGTCGCATTCTCCCAAATCAGAACGGCATACTAATTCCTCTTCACAAGCAACATTTTTCGGGATGCTTTCTGAAGCCTATTCCTACTTTATCAGAGCTCAGATTGAGATGGTATTGGGAAGGTTTGAGAGTGCAGTTGCAGCAGCAGAGAAAGCTTGTCAGATTGATTCCCGAAATGTTGAAGCTGCTGTCTTGCTCAACAATGTAAGAATGGTAACAAGAGCTCGAATGCGTGGCAACGATCTTTTTAAATCCGAAAGGTTCACTGAAGCTTGCTCGGCATATGGAGAAGGTTTGAAGCTGGATCCTTCAAATTCCGTTTTATATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGACAATGGGAAAGATCAGTCGAAGACTGCAATCAAGCTTTACTTATTCAACCAAACTACACAAAAGCTCTTCTTCGAAGGGCAGCCTCAAACAGCAAGCTTGAAAGATGGGAAGAAGCTGTCAAAGATTATGAGATAATGCGGAGAGACCATCCAAATGACAATGATGTTGCCGAAGCTCTTTTTCATGCACAAGTTGCACTGAAGAAATCATGTGGCGTAGAAGTCAATAATTTAAAATTTGGTGGCGAAGTGGAAGAAGTATCAAGTCTTGAGCAGTTTAGAGCTGCAATATTTATACCAGGTGTTTCTATTGTCCATTTTGAAACTGCATCGAATTCGCAATGCAAGGAAATATCACAATTTGTCGATACACTATGTGGTCGCTATCCATCTATTAACTTCCTCAAGGTGGATATTCAAGAAATTCCAACAATTGCCACCGCCGAGAATGTTAGGATTGTGCCAACCTTCAAGATATACAAAAACGGAAGTCGAGTGAAGGAAATCTTATGCCCTAGTCGCGATATGTTGGAACACTCTGTGAGGCATTACAGCTTATAA 1986 0.4517 MSHFGNPISDVVEFNKPDFRELDLGSPVSLLRNRGPAVSTSSSSSGSFSGGRIVQNPVPKRSESAPTITNTNHSGELSGSTETSPTNARGGSGSKPGHVRSNSGTSAPLIYSGQSVNSPVLNVLPTGNICPSRRIVRTGMAANRSTRSDVLGTGTGNYGHGSIMRGGKEVSGSGNGNEIVKRGVQSLDPEELKRVGNEHYKRGNFLEALSLYDKAIALSPGSAAYRSNRAAALMGLGRLVEAVRECEEAVSLDPNYGRAHYRLATLFIRLGQVENARKHLCHPRVQSDPSEKHKLQMVEKHISKCAEGRRIGDWKSVLREVDAAIASGADSSPQLFMCRAEALLKLHQIDDAVSILSHSPKSERHTNSSSQATFFGMLSEAYSYFIRAQIEMVLGRFESAVAAAEKACQIDSRNVEAAVLLNNVRMVTRARMRGNDLFKSERFTEACSAYGEGLKLDPSNSVLYCNRAACWFKLGQWERSVEDCNQALLIQPNYTKALLRRAASNSKLERWEEAVKDYEIMRRDHPNDNDVAEALFHAQVALKKSCGVEVNNLKFGGEVEEVSSLEQFRAAIFIPGVSIVHFETASNSQCKEISQFVDTLCGRYPSINFLKVDIQEIPTIATAENVRIVPTFKIYKNGSRVKEILCPSRDMLEHSVRHYSL* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0139 661 Gene3D Tetratricopeptide repeat domain 188 546 IPR011990 GO:0005515
Lan19g0139 661 ProSiteProfiles TPR repeat profile. 189 222 IPR019734 GO:0005515
Lan19g0139 661 SUPERFAMILY TPR-like 188 417 IPR011990 GO:0005515
Lan19g0139 661 MobiDBLite consensus disorder prediction 33 52 - -
Lan19g0139 661 CDD TRX_family 566 644 - -
Lan19g0139 661 Pfam Tetratricopeptide repeat 382 412 IPR019734 GO:0005515
Lan19g0139 661 Pfam Tetratricopeptide repeat 463 494 IPR001440 GO:0005515
Lan19g0139 661 SUPERFAMILY Thioredoxin-like 562 655 IPR036249 -
Lan19g0139 661 SMART tpr_5 223 256 IPR019734 GO:0005515
Lan19g0139 661 SMART tpr_5 461 494 IPR019734 GO:0005515
Lan19g0139 661 SMART tpr_5 495 528 IPR019734 GO:0005515
Lan19g0139 661 SMART tpr_5 333 366 IPR019734 GO:0005515
Lan19g0139 661 SMART tpr_5 381 414 IPR019734 GO:0005515
Lan19g0139 661 SMART tpr_5 427 460 IPR019734 GO:0005515
Lan19g0139 661 SMART tpr_5 189 222 IPR019734 GO:0005515
Lan19g0139 661 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 13 659 IPR044534 -
Lan19g0139 661 Coils Coil 501 521 - -
Lan19g0139 661 Gene3D Glutaredoxin 552 660 - -
Lan19g0139 661 MobiDBLite consensus disorder prediction 146 174 - -
Lan19g0139 661 MobiDBLite consensus disorder prediction 30 110 - -
Lan19g0139 661 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 13 659 - -
Lan19g0139 661 Pfam Thioredoxin 568 645 IPR013766 -
Lan19g0139 661 Pfam Tetratricopeptide repeat 233 279 - -
Lan19g0139 661 SUPERFAMILY TPR-like 431 544 IPR011990 GO:0005515
Lan19g0139 661 MobiDBLite consensus disorder prediction 60 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0139 Lan-Chr19 1216144 1219976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0139 426 497 U-box Gene Family AT3G07370 38.889 5.53e-09 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0139 19 1216144 1219976 Lan5g0885 5 21853020 21856990 LSH
Lan19g0139 19 1216144 1219976 Lan9g0250 9 3259133 3262944 LSH
Lan19g0139 19 1216144 1219976 Lan8g1354 8 20342982 20346692 PCT
Lan19g0139 19 1216144 1219976 Lan13g0597 13 4826618 4830084 PCT