Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0601 ATGGCGAACAGGAACTTGGAAAAAATGGCATCTATTGATGCACAGCTTCGGCAACTAGCTCCAGCCAAAGTGAGTGAGGATGATAAACTTGTTGAGTATGATGCTCTCCTACTGGATCGGTTCCTTGATATTCTTCAGGATTTACATGGAGAAGATATGAAGGAAACAGTTCAAGAAATATATGAGCTTTCTGCTGAATACGAAGGAAAGCATGATCCCAAGAAACTAGAAGAACTTGGAAATCTAATAACTAGTTTGGATGCTGGAGACTCTATTGTTTTTGCCAAGGCCTTTTCCCACATGCTTAACTTGGCCAACTTAGCTGAAGAGGTCCAGATTGCTCATCGCCGAAGAAACAAGTTGAAGAAGGGGGATTTTGCTGATGAGAATAATGCAACTACTGAATCAGACATTGAAGAAACTTTCAAGAGACTTGTCGGGGAATTGAAGAAGTCTCCTCAGGAAGTTTTTGATGCACTGAAAAACCAGACTGTTGATCTGGTTCTTACTGCTCATCCTACTCAATCAATTCGTAGATCTTTGCTTCAAAAGCATGGAAGGATCCGGAATAATTTAACTCAATTGTATGCCAAGGACATTACTCCTGATGATAAGCAGGAGCTTGATGAGGCTCTACAGAGGGAGATTCAAGCTGCCTTTCGCACTGATGAAATCAGGAGGACCCCTCCAACCCCTCAAGATGAGATGAGAGCAGGGATGAGCTACTTCCATGAAACAATTTGGAAGGGTGTACCCCAATTTCTCCGTCGTGTTGATACAGCTTTGAAGAATATAGGGATTAACGAACGTGTCCCTTATAATGCTCCTCTTATTCAATTTTCTTCTTGGATGGGTGGTGATCGTGATGGCAATCCAAGAGTAACTCCTGAAGTGACAAGGGACGTTTGCTTATTGGCTAGAATGATGGCTTCTAATTTGTACTATTCCATGATCGATGATCTTATGTTTGAGTTGTCAATGTGGCGCTGCAATGATGAACTACGTATTCGTGCAGATGAAATTAGCAGGTCTTCGAAGAAAGATGCTGTTGCAAAACACTATATAGAATTTTGGAAAATCATACCCTCAAGTGAACCATATCGTGTGATACTGGGTGAAGTCAGGGATAGGCTCTACCGGACGCGTGAGCGTTCTCGTCATTTGCTAGCTCAAGGATACTCTGACATTCCAGAGGAAGAAACTTTCACCAATGTTGAGGAGTTCTTGGAACCTCTTGAACTGTGTTATAGGTCACTCTGTGTTTGTGGTGATCGGGCAATTGCTGATGGAACCCTTCTTGATTTCTTGAGGCAAGTCTCCACTTTTGGATTGTCACTAGTGAGGCTTGATATCAGGCAAGAGTCAGACCGTCATACTGATGTGTTGGATGCCATTACTAAACACCTAGGAATTGGCTCATACCAGGAGTGGTCTGAAGAAAAACGGCAGCAGTGGCTCTTGTCTGAACTGAGTGGCAAACGACCGCTGTTTGGACCCGACCTTCCCCAAACTGAAGAAATTAAAGATGTTTTGGACACATTGCATGTCATAGCAGAACTACCACCAGACAACTTTGGAGCATATATCATATCAATGGCAACTGCACCATCTGATGTGCTCGCAGTTGAACTTCTGCAACGTGAGTGCCGTATCAAACATCCATTAAGAGTTGTTCCATTGTTTGAGAAGCTTGCAGATCTTGAGTCTGCTCCGGCTGCATTGGCTCGGTTGTTCTCAATAGACTGGTATAGAAATAGGATCAATGGGAAGCAAGAAGTCATGATTGGATATTCGGATTCTGGAAAAGATGCTGGAAGGTTCTCTGCAGCATGGCAGCTATATAAGGCTCAAGAGGAGCTTATAGAAGTAGCCAAGAAATTTGGTGTTAAGCTAACCATGTTCCACGGTCGTGGTGGAACTGTTGGAAGAGGTGGTGGTCCCACTCACCTTGCTATCCTGTCTCAACCTCCAGAGACAATTCATGGATCACTTCGTGTTACAGTCCAAGGTGAAGTTATTGAGCAATCATTTGGAGAGCAGCACTTGTGCTTTAGAACACTTCAACGTTACACTGCTGCTACTCTAGAACATGGAATGCATCCTCCAATTTCTCCCAAACCCGAATGGCGTGCTTTAATGGATCAGATGGCTGTCATTGCTACAGAGGAATACCGTTCTATTGTATTCCAAGAACCTCGCTTTGTTGAGTATTTCCGCCTGGCTACACCAGAGTTGGAGTATGGCCGGATGAATATTGGAAGTCGACCAGCAAAGCGAAGGCCAACTGGAGGTATTGAGACACTCCGTGCTATTCCTTGGATCTTTGCCTGGACACAAACAAGGTTTCATCTTCCTGTATGGCTAGGCTTTGGGGCAGCATTCAGACAAGTTATTACTAAGGATGTTCGGAATCTTAATATGCTGCAAGAGATGTACAATCAATGGCCTTTCTTTAGGGTCACTATTGATTTAGTGGAGATGGTGTTCGCCAAGGGTGACCCAGGCATAGCTGCTTTGTATGATAGACTTCTTGTTTCAGAAGATCTGTGGTCATTTGGGGAGCAATTGAGGACCAAGTTTGAAGAAACTAAGAAACTCCTCCTTCAGGTGGCTGCCCATAAGGATCTTCTTGAAGGAGACCCTTACTTGAAGCAAAGACTCCGTTTGCGTGATTCTTACATCACTACCCTTAATGTTTGCCAAGCTTACACATTGAAACGTATCCGTGATCCAAACTATGATGTGAAGCTGCGTCCCCACATCTCGAAAGAGTGTATAGAGATAAGTAAAGCTGCTGATGAACTTGTAACACTGAACCCAACAAGTGAATATGCCCCTGGGTTGGAAGACACCCTCATCCTCACCATGAAGGGTATTGCTGCTGGACTTCAGAACACTGGTTAA 2904 0.439 MANRNLEKMASIDAQLRQLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDMKETVQEIYELSAEYEGKHDPKKLEELGNLITSLDAGDSIVFAKAFSHMLNLANLAEEVQIAHRRRNKLKKGDFADENNATTESDIEETFKRLVGELKKSPQEVFDALKNQTVDLVLTAHPTQSIRRSLLQKHGRIRNNLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPQFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMASNLYYSMIDDLMFELSMWRCNDELRIRADEISRSSKKDAVAKHYIEFWKIIPSSEPYRVILGEVRDRLYRTRERSRHLLAQGYSDIPEEETFTNVEEFLEPLELCYRSLCVCGDRAIADGTLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITKHLGIGSYQEWSEEKRQQWLLSELSGKRPLFGPDLPQTEEIKDVLDTLHVIAELPPDNFGAYIISMATAPSDVLAVELLQRECRIKHPLRVVPLFEKLADLESAPAALARLFSIDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIEVAKKFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRYTAATLEHGMHPPISPKPEWRALMDQMAVIATEEYRSIVFQEPRFVEYFRLATPELEYGRMNIGSRPAKRRPTGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFRQVITKDVRNLNMLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEDLWSFGEQLRTKFEETKKLLLQVAAHKDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYDVKLRPHISKECIEISKAADELVTLNPTSEYAPGLEDTLILTMKGIAAGLQNTG* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0601 967 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 593 605 IPR033129 -
Lan13g0601 967 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 967 IPR022805 GO:0006099|GO:0008964|GO:0015977
Lan13g0601 967 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Lan13g0601 967 Coils Coil 104 124 - -
Lan13g0601 967 Gene3D Phosphoenolpyruvate/pyruvate domain 308 445 - -
Lan13g0601 967 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 967 IPR015813 GO:0003824
Lan13g0601 967 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan13g0601 967 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan13g0601 967 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan13g0601 967 PRINTS Phosphoenolpyruvate carboxylase signature 442 462 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan13g0601 967 PRINTS Phosphoenolpyruvate carboxylase signature 591 611 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan13g0601 967 PRINTS Phosphoenolpyruvate carboxylase signature 633 662 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan13g0601 967 PRINTS Phosphoenolpyruvate carboxylase signature 765 791 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan13g0601 967 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 967 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan13g0601 967 Pfam Phosphoenolpyruvate carboxylase 36 967 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lan13g0601 967 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 967 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0601 Lan-Chr13 4859967 4865777 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0622 7 4888659 4894436 Lan13g0601 13 4859967 4865777 LSH
Lan8g1351 8 20319490 20325076 Lan13g0601 13 4859967 4865777 LSH
Lan19g0136 19 1197883 1203495 Lan13g0601 13 4859967 4865777 PCT
Lan5g0882 5 21829808 21836675 Lan13g0601 13 4859967 4865777 PCT