Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0587 ATGAATCAAACTACTGATACGACGATGGATCAACAAAGGCGTGACTATTTTCAGTCTGAACCTTATATACCTTCCAGAAGCACCAACATCTCCACATCTAATATTCGCACTGTGGTGACAGCTTCAGGGAACACAACTAATCTTGATTCCCATGACTTGCCAGATGCTCATGACAATGTAATGATGAATAGGTTGACACAATACACTAGCATTCAGAATCAACACAATCGTGATAGGGATGTTTCAGTTGTTCCCCACTTATTTTACTCTGGAATGAATCCTTTATCTAGTACTGGTGCATTGCCTCTGCCTTTAAACCACACTGTGTCTGATCAGTTACATGGTTCTAGCACATCTGCAATATCTGGAGCATACAAAAGGAAAAATACTGAAAGGAATAGAGGAAATTTTCAGCATTTCGATGCATCTGCTAGTTCTTCAACTGCTCCGCCCAATGCAATATACAGTGATGGGGCTGGTATGATGGATATTGCATCGTTTTCAATGCCTCAGCGTAGAGGAAATGGCATCCCTTCACTTGTGGAAGTTGGACCACATGGTAGTTCGTGGAGCGGATCGGGCGAGTCTATTATGGTGCCTGACCATAACCATTTGATTCGAGGAAACTATTTAGGACCACATTTTCAGCCAGCTGCTGCTCCCTGGCCAGAGCAGCCATTGAACTATAATATTAATGATGGTCATGCTACAGCCTGGAATCAGTCTCTTCCAATGCCTTATTTACAAGTTCGTGATGTTAATGAAAGTCTATTAGAGGATGCAAGTATGGGTCTGCAGATGTATCATAATACATCTAGCAACAGAAGTGGCTTCAGGTTTCCTCATCCTCCTCCTGTGAATCCCCTGCACCATAACTTTCATCATCCAACACTTCCTATGCAAGGAATGAGAGGTCACTCTATCAGCTTTCACCCTCCCTCAGCTTCATATAGGGTTCCCACGAATCCTTTACGCAGTGCTGTAATCCCGGCACAAAATGATTTTGAGATGGGTGCTAGGCACCTTCGCATTGCACCACCTGCAGGTCTACGCAGACACCGGCCTCATAGAGGAGTCATGCCCAATGCAACCCTAGGACATCAAAATCTTTCTCCTATGCACTTCTTCCAAGTTGATGATGTTGCCCTACTTGTAGACCACCATAGAGATATGCGCTTGGACATTGATGAAATGTCTTATGAGGAACTTCTTGCATTGGGCGAGCGGATTGGCAATGTAAGCACAGGTTTATCTGAGGAAATGATTACAGCTCAAATGAAGACAAAGACTTATTCAGTACCTGCTACTGTTATTAATTTGGAGGAGGTGGCTTCTGAGGAACCGGAAACTGCTTCTTGCATAATATGCATGGATGAATATCAGAACCAAGAGAAGATTGGAATTCTGCAATGCGGGCACGAGTGTCATGCAGATTGTTTAAGGAAATGGTTGCTTGTGAAAAATGTGTGCCCCATATGCAAATCGAAAGGGTTGATCCTGGAGTGA 1506 0.4363 MNQTTDTTMDQQRRDYFQSEPYIPSRSTNISTSNIRTVVTASGNTTNLDSHDLPDAHDNVMMNRLTQYTSIQNQHNRDRDVSVVPHLFYSGMNPLSSTGALPLPLNHTVSDQLHGSSTSAISGAYKRKNTERNRGNFQHFDASASSSTAPPNAIYSDGAGMMDIASFSMPQRRGNGIPSLVEVGPHGSSWSGSGESIMVPDHNHLIRGNYLGPHFQPAAAPWPEQPLNYNINDGHATAWNQSLPMPYLQVRDVNESLLEDASMGLQMYHNTSSNRSGFRFPHPPPVNPLHHNFHHPTLPMQGMRGHSISFHPPSASYRVPTNPLRSAVIPAQNDFEMGARHLRIAPPAGLRRHRPHRGVMPNATLGHQNLSPMHFFQVDDVALLVDHHRDMRLDIDEMSYEELLALGERIGNVSTGLSEEMITAQMKTKTYSVPATVINLEEVASEEPETASCIICMDEYQNQEKIGILQCGHECHADCLRKWLLVKNVCPICKSKGLILE* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0587 501 Pfam Ring finger domain 452 494 IPR001841 -
Lan13g0587 501 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 122 498 IPR045191 GO:0061630
Lan13g0587 501 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 122 498 - -
Lan13g0587 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 497 IPR013083 -
Lan13g0587 501 SUPERFAMILY RING/U-box 452 496 - -
Lan13g0587 501 ProSiteProfiles Zinc finger RING-type profile. 453 494 IPR001841 -
Lan13g0587 501 SMART ring_2 453 493 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0587 Lan-Chr13 4697066 4701918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0587 386 498 C3H Transcription Factor Family AT2G15530 53.913 2.61e-34 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1367 8 20515151 20519681 Lan13g0587 13 4697066 4701918 LSH
Lan19g0151 19 1341567 1345768 Lan13g0587 13 4697066 4701918 PCT
Lan5g0905 5 22075662 22079787 Lan13g0587 13 4697066 4701918 PCT
Lan9g0260 9 3400548 3404773 Lan13g0587 13 4697066 4701918 PCT
Lan13g0587 13 4697066 4701918 Lan19g0151 19 1341567 1345768 PCT
Lan13g0587 13 4697066 4701918 Lan5g0905 5 22075662 22079787 PCT
Lan13g0587 13 4697066 4701918 Lan9g0260 9 3400548 3404773 PCT