Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1081 ATGATGACTCCAAACTTGAACCTGAAACCTGAAAATAATTCAGAGTTCAGCAGCCAAGTAGATTCCATTATATCATTACAGGAAACATTCTATGATCTTACAAAGGACACCACTCTCAGAACTTTCACAAAGGCTAATCCTGATTCAGGTACTATAACTCTTGACTTGACCCTCAATTTCAATCCCAATGAAAAGTTGAAGGGTGCAACTGATACTAGCAGTGAAGAGGGTGTTGAAGCTTCAGCATCAGCAATTCCTAGAGTTTTCTCGTGTAACTATTGTTGGCGAAAATTCTTTAGCTCACAGGCATTAGGTGGCCATCAGAATGCTCATAAAAGGGAGAGGATTATGGCGAAGCGTGCAATGCGAATGGGAATGTTCACCGAAAGGTATACAAGCTTAGCATCTCTACCAGTTCATGGTTCGGTGTGTCGATCGCCTAGTATCGAAGCTCACTCCACATTGCATAAAAAGCATATGCAATCAGTGAGGTCTCCTGATATGAGAGTTGCAGCAAAATTTCAGAAAGATTGTTTTGGAAGACTAATCATTATGGAAGATAATAATGTAGGTCTATTTTGGCCTGGTAGTTTCAGGCAAATAGACCAAAGGGAGCATGTTCAAAATTCTAAGACTAGTTTTGTAGAAATGGTGCCTCATGCACAAACTTCTACAGCTCCTGATCTCACTCTAAGGCTTTAA 702 0.4031 MMTPNLNLKPENNSEFSSQVDSIISLQETFYDLTKDTTLRTFTKANPDSGTITLDLTLNFNPNEKLKGATDTSSEEGVEASASAIPRVFSCNYCWRKFFSSQALGGHQNAHKRERIMAKRAMRMGMFTERYTSLASLPVHGSVCRSPSIEAHSTLHKKHMQSVRSPDMRVAAKFQKDCFGRLIIMEDNNVGLFWPGSFRQIDQREHVQNSKTSFVEMVPHAQTSTAPDLTLRL* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1081 233 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Lan11g1081 233 Gene3D Classic Zinc Finger 79 136 - -
Lan11g1081 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Lan11g1081 233 PANTHER ZINC FINGER PROTEIN 3-RELATED 7 233 - -
Lan11g1081 233 SUPERFAMILY beta-beta-alpha zinc fingers 87 116 IPR036236 -
Lan11g1081 233 PANTHER ZINC FINGER PROTEIN JAGGED 7 233 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1081 Lan-Chr11 13919327 13939058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1081 87 233 C2H2 Transcription Factor Family AT1G66140 43.575 2.55e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan11g1081 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1081 11 13919327 13939058 Lan11g1081 11 13919327 13939058 ECH