Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0544 ATGGCTATGGATCCAATCAAGAAGCGTAAGCTCGACGAGAACGGTTTCTCAGTCGCCGATTCCGACCTCGTCACTCTCACCACCTCCGACGCCCGTAAGATCATTGAGCGCTTCACCCAGGAACAGCTCCTTGACATCCTACAAGACGCCGTTGTCCGCCACCCCGATGTCCTCGCCGCCGTACGTTCCGTCGCCGACACGGATCAGACCCAGCGCAAGCTCTTCATTCGTGGCCTGGGATGGGACACTACCACCGATGGCCTCCGTTCTCTCTTCTCCGCCTACGGCGACCTCGAAGAAGCTGTCGTGATTCTTGATAAGACCACTGGGAAATCCAAGGGCTATGGATTCGTTACGTTCCGCCATGTGGATGGTGCACTCCTCGCACTGAAGGAACCAAGCAAGCGCATCGATGGGCGCGTCACTGTCACTCAGCTTGCTGCGGCTGGGAATTCTGGCAGCACTACCAATACAGCTGATATCGCGCAACGGAAGATTTATGTTGCGAATGTGCCACCGGATCTTCCTGCTGATAAACTTCTTGCCCATTTCTCGGTTTATGGAGAGATCGAGGAAGGACCGTTAGGGTTTGATAAGCAGACCGGAAAGTCCAAGGGATTCGCCCTTTTTGTGTATAAGTCACCGGAGGGGGCGCAGGCAGCGCTGGTAGAACCGGTGAAGAATGTTGAAGGGAGACAGCTGAATTGCAAACTGGCAATAACGGATGGGAAGCAGGGGAAGCGTGGTGTTGGTGGTGGGCAGGATGGGGTTCAGAATCATGGGAATTCCCATGGGCATGGTGATGGAATGGGGTTACCTCCACCGTCATCTGTGCCTGGTTCGTATGGTGGTCCAATTGGTGGTAATATGGGTTCATATGGTGGGTTTCCAGGACAGCCTCCAATAGGTGGCCATCCTTTGAATTCGTCTGTCAGTGGGTTAGGTTCAGTGGCAAATCAGGCACCATCATCTCTGGGCGCAGGCGGTGGATATGGTTCTGTTGGTACTGGTAGTAGTGGCGGGTATGGATCTGTTGGTACTGCTGCTGGTGGTGGATATGGGTCTGTTGGTGGTGCTGCTGCTGGTGGGTATGGGTCTGTTGGTGCTGCTGCGGGTGGTGGGTATGGATCTGGTCTTGGTAGTCAGTATGGAGGATATGGTGGAGGCCCTGGTTCGGCTGGCTTTGGTGGTGCGGGTGGTTATGGAGGAGTTGGTGCTGGTGCTAATGCTGGTTCTGCTGGTGGACTTGGTGGCACTGGTGGTAGTTTGGGTGGTGCAGGTTCTTTGTATAGATTGCCGGGTTCGGGTGGAATGCCTGGTGGTGGATATGGAGAGGGTGGACATTATAGTTTATCAGCTTCATCTGGGTACCAGAATCAGCATCACCCTCCTTCTGGAGCCTCACCGGCTCCTAGGGTGCCACCTGGTTCTGTGTATCAAAATGTTCCCCCTTACTACTGA 1461 0.5448 MAMDPIKKRKLDENGFSVADSDLVTLTTSDARKIIERFTQEQLLDILQDAVVRHPDVLAAVRSVADTDQTQRKLFIRGLGWDTTTDGLRSLFSAYGDLEEAVVILDKTTGKSKGYGFVTFRHVDGALLALKEPSKRIDGRVTVTQLAAAGNSGSTTNTADIAQRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKSPEGAQAALVEPVKNVEGRQLNCKLAITDGKQGKRGVGGGQDGVQNHGNSHGHGDGMGLPPPSSVPGSYGGPIGGNMGSYGGFPGQPPIGGHPLNSSVSGLGSVANQAPSSLGAGGGYGSVGTGSSGGYGSVGTAAGGGYGSVGGAAAGGYGSVGAAAGGGYGSGLGSQYGGYGGGPGSAGFGGAGGYGGVGAGANAGSAGGLGGTGGSLGGAGSLYRLPGSGGMPGGGYGEGGHYSLSASSGYQNQHHPPSGASPAPRVPPGSVYQNVPPYY 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0544 486 MobiDBLite consensus disorder prediction 467 486 - -
Lal9g0544 486 SUPERFAMILY RNA-binding domain, RBD 157 267 IPR035979 GO:0003676
Lal9g0544 486 MobiDBLite consensus disorder prediction 441 486 - -
Lal9g0544 486 Gene3D - 48 153 IPR012677 -
Lal9g0544 486 SUPERFAMILY RNA-binding domain, RBD 64 147 IPR035979 GO:0003676
Lal9g0544 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Lal9g0544 486 MobiDBLite consensus disorder prediction 451 465 - -
Lal9g0544 486 PANTHER GEO13361P1-RELATED 3 359 - -
Lal9g0544 486 CDD RRM_RBM24_RBM38_like 72 147 - -
Lal9g0544 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 245 IPR000504 GO:0003723
Lal9g0544 486 SMART rrm1_1 165 237 IPR000504 GO:0003723
Lal9g0544 486 SMART rrm1_1 73 145 IPR000504 GO:0003723
Lal9g0544 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 141 IPR000504 GO:0003723
Lal9g0544 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 233 IPR000504 GO:0003723
Lal9g0544 486 CDD RRM_RBM24_RBM38_like 164 239 - -
Lal9g0544 486 MobiDBLite consensus disorder prediction 243 315 - -
Lal9g0544 486 PANTHER UBP1-ASSOCIATED PROTEIN 2C 3 359 - -
Lal9g0544 486 Gene3D - 154 272 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0544 Lal-Chr9 3668929 3674128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0544 160 239 C2H2 Transcription Factor Family AT2G19380 41.250 4.32e-11 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0544 9 3668929 3674128 Lal9g0544 9 3668929 3674128 ECH
Lal2g0628 2 3730719 3737231 Lal9g0544 9 3668929 3674128 LSH