Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0739 ATGAATAATAAAACACAACATTCAACTTCCAAATCTTTGCATCAACAAGGTTTTGATTCTCTGCTTTTCGACCACACCAACAACAAACCCGATTCCAAACACTTCGATCTAAAACTCACCACCACCACCACCACCTCCTCCACCACAACACAAAACTCCATACCTTCTCACCGGAGATCAGTCTCCGCCGGAGTTCCATTAATCTACTCCGGCGGAGCTTCCACTATATCAACTCCCACTCCCGCTCACAAAATGGGTTTACCCACTCGTGGATCGACCAGACCCGATGTGTTGGGTTCAGGGACCGTCAACTACGGGCGCGGCAGCATAATGCGGCGCGGTGGTGGTTCAAAGTTAAGTAGTAGTAGTAGTAGTAACAGTGGTGATGATAATCCAGTGGGTGCGGGTGTATCGATGGTGAAGCAGCGTGTAATGGTTGGTGGTTCTGATCCTGAAGAGGTGAAGAGAGTTGGGAATGAGTTATATAGGAATGGGAATTTTTCAGAAGCGTTGGTTTTGTATGATCGTGCTGTTTCAATGTCGCCGGGGAATGCCGCTTACCGGAGTAACCGTGCGGCGGCGCTTACGGCGTTGGGGAGGTTCGGAGAAGCGGTTAGGGAGTGTGATGAGGCCGTTAAGTTGGATCCTACTTATGCCAGGGCTCATAAGAGGCTTGCGTCTCTTTATCTTCGCTTTGGGCAGGTTGAAAACTCCGGGCGACATCTCTTTCTCTCGGTACTGCAGGACAATCAATCTGAAGAGCAGAGACTGCGGTTATTGGAGAAGCATCTGAACCGATGTGTAGATGCGAGAAAGTTTGGTGATTGGAATAGAGTACTTAGGGAATCGGAGGCAGCAATTGCAGTAGGAGCAGATTTGTCACCTCAGCTTGTTGCTTGTAAAGCCGAAGCTTATTTAAAACTCCATCGGTTTGAGGATGCTGAATCGTGTATCTCAAACATTCCCAAGTTGGAAGGTTGTCCACATGCCTGCACTCAAACCAAGTTCTTTGGTATGATCGGTGAAGCCTATGTGCCCTTTGTCGTCGCACAGGTTGAGATGGCCTTGGGAAGGTTTGAGAATTCTGTCATAGAAGCAGAAAAGGCTAGCAAGTTAGATTACAGTAATATTGAAGTTGCTAAGATTGTAAATACCGTGAGAATGGTGGCAAGAGCTCGTTCTAGGGGCAACGATCTTTTCAGCTTCGGTAAATTTTCTGAAGCTTGTTCTGCTTATGGAGAAGGCCTGAAATATGACAATGCCAACCATGTTCTGTATTGCAATAGAGCTATTTGTTGGTCTAAACTTGGACTATGGGAACAATCTGTTCAAGATTGCAACCAAGCTCTCAACATTCAACCGAATTACAACAAGGCCATTTTTCGCAGGGCTGTATCAAATGCAAAGCTTGAAAGATGGGCAGAAGCTGTTAAAGACTACGAGGCATTGAAAAGCAAACTTCCTCATGACAATGAAGTCGCCGAATCCCTTCGTCAGGCTCGACTTGGATTAGAAAAATCTCGTGGAATGATATATGGTACCAAGTTTGGAGTTGAAGTTGAAGAAATCTCCGCGTTAGATAAATTCAAAGCTGCCATTGCTTCTGCTGGTGTTTCAGTAGTTCATTTCAAAGAGGCATCAAATGAACTATGTGAAGAAATGTCTCCATTCATAAATACATTATGTGTTAGATATCCTTCTGTTAAATTTATCAAGGTGGTGGTGGAGGAATCTCTACTAATAGCAAAAGCTGAAAGCATAAGAAGTGTTCCAACTTTTAAAATTTATAAAAATGGTGAGAAGGTGAAGGAAATGATTCGCCCAACCCATCAGTTCTTAGAGGATTCAGTGAGAAAAAGTATTTAG 1866 0.4443 MNNKTQHSTSKSLHQQGFDSLLFDHTNNKPDSKHFDLKLTTTTTTSSTTTQNSIPSHRRSVSAGVPLIYSGGASTISTPTPAHKMGLPTRGSTRPDVLGSGTVNYGRGSIMRRGGGSKLSSSSSSNSGDDNPVGAGVSMVKQRVMVGGSDPEEVKRVGNELYRNGNFSEALVLYDRAVSMSPGNAAYRSNRAAALTALGRFGEAVRECDEAVKLDPTYARAHKRLASLYLRFGQVENSGRHLFLSVLQDNQSEEQRLRLLEKHLNRCVDARKFGDWNRVLRESEAAIAVGADLSPQLVACKAEAYLKLHRFEDAESCISNIPKLEGCPHACTQTKFFGMIGEAYVPFVVAQVEMALGRFENSVIEAEKASKLDYSNIEVAKIVNTVRMVARARSRGNDLFSFGKFSEACSAYGEGLKYDNANHVLYCNRAICWSKLGLWEQSVQDCNQALNIQPNYNKAIFRRAVSNAKLERWAEAVKDYEALKSKLPHDNEVAESLRQARLGLEKSRGMIYGTKFGVEVEEISALDKFKAAIASAGVSVVHFKEASNELCEEMSPFINTLCVRYPSVKFIKVVVEESLLIAKAESIRSVPTFKIYKNGEKVKEMIRPTHQFLEDSVRKSI 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0739 621 Gene3D Glutaredoxin 510 621 - -
Lal8g0739 621 CDD TRX_family 529 614 - -
Lal8g0739 621 MobiDBLite consensus disorder prediction 72 135 - -
Lal8g0739 621 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 24 619 IPR044534 -
Lal8g0739 621 Gene3D Tetratricopeptide repeat domain 149 509 IPR011990 GO:0005515
Lal8g0739 621 SUPERFAMILY Thioredoxin-like 432 619 IPR036249 -
Lal8g0739 621 SMART tpr_5 389 422 IPR019734 GO:0005515
Lal8g0739 621 SMART tpr_5 185 218 IPR019734 GO:0005515
Lal8g0739 621 SMART tpr_5 457 490 IPR019734 GO:0005515
Lal8g0739 621 SMART tpr_5 423 456 IPR019734 GO:0005515
Lal8g0739 621 SMART tpr_5 151 184 IPR019734 GO:0005515
Lal8g0739 621 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL4 24 619 - -
Lal8g0739 621 SUPERFAMILY TPR-like 150 378 IPR011990 GO:0005515
Lal8g0739 621 Pfam Thioredoxin 527 608 IPR013766 -
Lal8g0739 621 ProSiteProfiles TPR repeat profile. 151 184 IPR019734 GO:0005515
Lal8g0739 621 MobiDBLite consensus disorder prediction 115 132 - -
Lal8g0739 621 Pfam Tetratricopeptide repeat 161 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0739 Lal-Chr8 5275874 5279357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0739 131 236 Glycosyltransferase AT3G04240 29.245 1.71e-06 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0739 8 5275874 5279357 Lal8g0739 8 5275874 5279357 ECH
Lal10g0665 10 14463973 14467528 Lal8g0739 8 5275874 5279357 LSH
Lal1g0598 1 3831347 3835015 Lal8g0739 8 5275874 5279357 PCT
Lal9g0546 9 3691734 3695475 Lal8g0739 8 5275874 5279357 PCT