Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1077 ATGATCCGAAACGTTTTGAAACGTTTTCATCAACGTTTCGATCCCACTCTCCTGAAACCCCTAAAAACCTCTTCACCCGCTTCACTCTTTCACACTGCCACCAAAACCTTAGCTCAAGCTCCGAAGCTAAACTTTGTCTCCAACGACTTGGTCGAAGAATCTGAATGGAAATGGAGAGTGAAAGAAGAAAAAAATGAGTGCAGTTTGGTGGATAATAAGGAAGAATGTGTGGTTCAGAAGATTTCGCATCCTTGGCCTGAATGGGTGAACTTGATGAAATATTTGCTTAAAAAAGGATACTTTGATGGTGCAGAAGGAAACCCTTTTGAAAATGGTGATTTGGGTGCGAAAGAATGTAATGTTCTTAGAACTGCATGTTTGAATTTTGGTAGAGACCGGTTTGAACTTTTAAGAGTCCCACCGCAATTGTGGTGTGATGCGGTTGCGGCCTCACCACAACCACAATATTGCGGCCGCATCAGGTTTTTGTCTCGAAATGATATAGGAGTTACTGTAGCATTAGGTTGTCCAAGCTTAGATAGGAAAGTCGTAAACTCAGGAAAGCGTTTGAGAGCACATGTGGGCATTGACGAGGGAAATGTCTGCAGCTCCTGCAATTTGAGGGGAGATTGTGACAGAGCATTTGTGAAGGCGCGTGAAGATGAAGGTGGAAGAACAGTGGATGTTATGCGTATTATATTGACTTATGGGCTTGACCCGATTATTGGTTCAGTACAGAACAAACCATGTATAAATAAAAAAGTAAAAGAATCTGTGATAAGCCTGCTTAGAGAAATAGTAGAGCAAAGTACTAACGAGGAAGATTCTAATCGTCCAGACACCACAAAGGTTCTCATTGGACAAGTCATTCACAATCCGCGAGACAAGGGCAAAGTAGATGTTCTGATGAAGCCAGGCGACTGGCTTTGCCCCAAATGCAATTTCAACAATTTTGCCAGAAATATCAAGTGCCTGCGCTGTGACAGCTTTTTTGAGGAAAGAATCAAGCAATTGCAGGAGGATAACAATCACTTACCTTTAAAGAAGGGAGACTGGATATGCATTAAATGCAACTTTTTAAATTTTGCAAAGAATACAAGATGTTTCCTATGCAAAGAGAAGCCTCCCAAGCGGCACCTTAATCCAGGGGAATGGGAATGTGACTCGTGCAACTACATCAATTTCAGAAGAAACATGGTTTGCCTCAAATGCGATCATAGACGACCTAAGGTCTTAAATGCTTCAAACTCTTCTGATCAACCTCAACACGAAGATAAAGACTACCCAAAGAATAGCAGAATGACTTTTGTGAGACGTCTTGGCGATAGTAGTGACAAATCATCAATGTTTTCAGGAAGAAAAAACAGGAATAAAGATTCACCTATGTGGAGATTCGGAGAGGATAGAGTTGAAGATCGCAACTACTTAAATACATCAAATGGTCATTCACAATCTATAGACTTTTCTATTGCTGGAGGCAAGGCTAAATTACCCGAGCCACGAAAGAGAGAAGCAGCAGCGAAGAATGAGTTGTTAAATCGGTGGGAAAGTGAAAGTGATGATGAGTTAGGATCTTCTGATATCAATAGCACTGATGATGAAGATATGTCTGAATGGTTTGGAAATGGTAAGAATGAGAGGTAA 1644 0.4106 MIRNVLKRFHQRFDPTLLKPLKTSSPASLFHTATKTLAQAPKLNFVSNDLVEESEWKWRVKEEKNECSLVDNKEECVVQKISHPWPEWVNLMKYLLKKGYFDGAEGNPFENGDLGAKECNVLRTACLNFGRDRFELLRVPPQLWCDAVAASPQPQYCGRIRFLSRNDIGVTVALGCPSLDRKVVNSGKRLRAHVGIDEGNVCSSCNLRGDCDRAFVKAREDEGGRTVDVMRIILTYGLDPIIGSVQNKPCINKKVKESVISLLREIVEQSTNEEDSNRPDTTKVLIGQVIHNPRDKGKVDVLMKPGDWLCPKCNFNNFARNIKCLRCDSFFEERIKQLQEDNNHLPLKKGDWICIKCNFLNFAKNTRCFLCKEKPPKRHLNPGEWECDSCNYINFRRNMVCLKCDHRRPKVLNASNSSDQPQHEDKDYPKNSRMTFVRRLGDSSDKSSMFSGRKNRNKDSPMWRFGEDRVEDRNYLNTSNGHSQSIDFSIAGGKAKLPEPRKREAAAKNELLNRWESESDDELGSSDINSTDDEDMSEWFGNGKNER 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1077 547 ProSiteProfiles Zinc finger RanBP2 type profile. 381 410 IPR001876 -
Lal6g1077 547 MobiDBLite consensus disorder prediction 449 475 - -
Lal6g1077 547 SUPERFAMILY Ran binding protein zinc finger-like 342 376 IPR036443 -
Lal6g1077 547 MobiDBLite consensus disorder prediction 496 521 - -
Lal6g1077 547 Pfam Zn-finger in Ran binding protein and others 348 372 IPR001876 -
Lal6g1077 547 Pfam Zn-finger in Ran binding protein and others 383 405 IPR001876 -
Lal6g1077 547 Pfam Zn-finger in Ran binding protein and others 304 329 IPR001876 -
Lal6g1077 547 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 160 545 - -
Lal6g1077 547 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 17 138 - -
Lal6g1077 547 ProSiteProfiles Zinc finger RanBP2 type profile. 304 333 IPR001876 -
Lal6g1077 547 ProSiteProfiles Zinc finger RanBP2 type profile. 348 377 IPR001876 -
Lal6g1077 547 Gene3D - 339 377 - -
Lal6g1077 547 Gene3D - 296 330 - -
Lal6g1077 547 Gene3D - 378 410 - -
Lal6g1077 547 MobiDBLite consensus disorder prediction 412 547 - -
Lal6g1077 547 ProSitePatterns Zinc finger RanBP2-type signature. 385 404 IPR001876 -
Lal6g1077 547 PANTHER ZINC FINGER PROTEIN 17 138 - -
Lal6g1077 547 PANTHER ZINC FINGER PROTEIN 160 545 - -
Lal6g1077 547 SUPERFAMILY Ran binding protein zinc finger-like 377 410 IPR036443 -
Lal6g1077 547 ProSitePatterns Zinc finger RanBP2-type signature. 308 327 IPR001876 -
Lal6g1077 547 SUPERFAMILY Ran binding protein zinc finger-like 297 329 IPR036443 -
Lal6g1077 547 SMART zf_4 350 374 IPR001876 -
Lal6g1077 547 SMART zf_4 306 330 IPR001876 -
Lal6g1077 547 SMART zf_4 383 407 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1077 Lal-Chr6 7913154 7917158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1077 4 409 EF-hand Containing Proteins AT1G55040 34.932 5.73e-62 216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1077 6 7913154 7917158 Lal6g1077 6 7913154 7917158 ECH