Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0628 ATGGCTATGCCTATTACTATGCCTATGGATCCAACCAAGAAACGTAAACTCGAAGAAAACGGTTTCTCCGCCGTTGATTCAGATCTCGTCACTCTCTCACCCTCTGACGCCCGCAAGATCATTGACCGATTCACCCAAGAACAGCTCCTTGCCATCTTACAAGACGCCACCGTCCGCCACCCCGACGTTCTCGCCGCTGTCCGCTCCGTCGCCGACACAGACCAAACACAGCGTAAGCTCTTCATTCGCGGCCTCGGTTGGGACACAACCACCGACGGCCTCCGCTCTCTTTTCTCCGCTTATGGTGATCTCGAAGAAGCCGTTGTTATCCTCGATAAGGCCACCGGGAAATCAAAGGGCTACGGCTTTGTCACGTTCCGCCATGTTGATGGTGCACTCCTTGCTCTTAAGGAGCCTAGCAAACGCATCGACGGGCGCGTCACTGTAACGCAGCTCGCTGCGTCTGGGAATTCAGGGAACACTACTAATACAGCAGATATTGCGCAACGGAAGATTTATGTTGGGAATGTGCCACCGGATCTTCCTGCAGATAAACTTCTTGCACACTTTTCGATATATGGGGAGATCGAAGAGGGGCCATTAGGGTTTGATAAGCAGACTGGAAAATCAAAGGGTTTCGCGCTTTTTGTGTATAAGTCACCTGAAGGGGCGCAGGCGGCGCTGTTAGAATCGGTGAAGAATGTGGAAGGGAGACAGCTGAATTGTAAACTAGCAATAACAGACGGGAAGCAAGGGAAGCGTGGTGCTGGTGGAGTTGGTGTGCAGGATGGGGTTCAGGGTCATGGGAATTCTCATGGGCATGGTGATGGAATGGGGATGGCACCACCGTCGTCTGTGCCTAGTTCATATGGTGGTCCGGTTGGTAACAATATGAGTTCATATGGTGGGTTTCCAGGACAGCCTCCAATGGGTGGTCATCCGTTGAATTCATCCGTTGGTTTGTTGGGTTCGGTGGCCAATCAGGCACCACCATCGTCTCTTGGTGCCGCTGGTGGGTATGGGTCTGGGGGTGGTTATGGGTCTGGTATTGGTGGTCATTACGGAGGATATGGTGGAGGCCCTGGTTTGACTGGTTTTGGTGGTGCTGGTTATGGAGGAGTTGGTGGTGGTGTTGCTGCTGGTGGTGGACTTGGTGGCGCTGGTGGTGGTTTGGGAGGTGCGGTTGGTGGCGTGGGAGGTGCGATTGGTAATGTGGGTGGTGGTTTGGGAGGTGCGGGTTCTTTGTATAAATTGCCGGGTTCAGGTGGAATGCCTGGTGGTGGATACGGAGAGAGTGGACAATATAGTCTATCAGCTTCATCTGGGTACCAGAATCAGCATCACCCTCCTTCAGGAGCCTCATCAGTACCTAGAGTTCCACCCGGTTCTATGTATCCAAATGTTCCTCCTTACTACTGA 1419 0.5285 MAMPITMPMDPTKKRKLEENGFSAVDSDLVTLSPSDARKIIDRFTQEQLLAILQDATVRHPDVLAAVRSVADTDQTQRKLFIRGLGWDTTTDGLRSLFSAYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALKEPSKRIDGRVTVTQLAASGNSGNTTNTADIAQRKIYVGNVPPDLPADKLLAHFSIYGEIEEGPLGFDKQTGKSKGFALFVYKSPEGAQAALLESVKNVEGRQLNCKLAITDGKQGKRGAGGVGVQDGVQGHGNSHGHGDGMGMAPPSSVPSSYGGPVGNNMSSYGGFPGQPPMGGHPLNSSVGLLGSVANQAPPSSLGAAGGYGSGGGYGSGIGGHYGGYGGGPGLTGFGGAGYGGVGGGVAAGGGLGGAGGGLGGAVGGVGGAIGNVGGGLGGAGSLYKLPGSGGMPGGGYGESGQYSLSASSGYQNQHHPPSGASSVPRVPPGSMYPNVPPYY 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0628 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 155 IPR000504 GO:0003723
Lal2g0628 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 147 IPR000504 GO:0003723
Lal2g0628 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 238 IPR000504 GO:0003723
Lal2g0628 472 CDD RRM_RBM24_RBM38_like 170 245 - -
Lal2g0628 472 MobiDBLite consensus disorder prediction 252 294 - -
Lal2g0628 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 247 IPR000504 GO:0003723
Lal2g0628 472 PANTHER UBP1-ASSOCIATED PROTEIN 2C 9 438 - -
Lal2g0628 472 SUPERFAMILY RNA-binding domain, RBD 164 278 IPR035979 GO:0003676
Lal2g0628 472 MobiDBLite consensus disorder prediction 427 472 - -
Lal2g0628 472 PANTHER GEO13361P1-RELATED 9 438 - -
Lal2g0628 472 Gene3D - 46 162 IPR012677 -
Lal2g0628 472 Gene3D - 163 280 IPR012677 -
Lal2g0628 472 MobiDBLite consensus disorder prediction 433 452 - -
Lal2g0628 472 SUPERFAMILY RNA-binding domain, RBD 70 157 IPR035979 GO:0003676
Lal2g0628 472 CDD RRM_RBM24_RBM38_like 78 153 - -
Lal2g0628 472 SMART rrm1_1 79 151 IPR000504 GO:0003723
Lal2g0628 472 SMART rrm1_1 171 243 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0628 Lal-Chr2 3730719 3737231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0628 166 340 C2H2 Transcription Factor Family AT2G19380 31.658 5.02e-11 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0628 2 3730719 3737231 Lal2g0628 2 3730719 3737231 ECH
Lal2g0628 2 3730719 3737231 Lal9g0544 9 3668929 3674128 LSH