Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0627 ATGATGAAGCAATCCATGCTCAGATCCCTCCACTCAGCCGTCTCCCGCCGCTCCTCTCATCTCACTCGCCGTGGCTACGCCACCGAGCCAGTGCCGGAACGCAAGGTTGCCATCCTTGGTGCCGCCGGTGGTATTGGTCAACCCCTTTCTCTGTTGATGAAGCTCAATCCCCTCGTTTCTAGCCTCTCACTCTACGATATCGGTGGTACCCCCGGTGTCGCCGCCGATGTCAGCCACATTAACACCAGATCTGAGGTAGTTGGATACCAAGGTGAAGACCAGCTTGGAAAAGCTTTGGAGGGAGCTGATGTCGTCGTTATCCCTGCTGGTGTGCCTAGAAAGCCTGGAATGACCCGTGACGATCTTTTCAATATTAACGCTGGCATTGTCAAGTCACTGGCTGCTGCTATTGCCAAGTACTGTCCCCATGCCCTTGTTAACATGATAAGCAATCCTGTGAACTCCACCGTTCCCATTGCTGCTGAGGTTTTCAAGAAGGCAGGGACATATGATGAGAAGAGGTTGTTCGGTGTGACCACCCTTGATGTTGTTAGGGCAAAAACTTTCTATGCTGGGAAAGCCAATGTTCCAGTTGCTGAGGTCAATGTACCTGTTGTAGGTGGCCATGCAGGCATTACTATTCTGCCTCTATTTTCTCAAGTACCTTCTCGCTCTTTAGCTAAACAATTTCCTTCTTTTGTGAAGGCATTTCTGGCAACACCACAAGCCAATCTGGATGATGATGTCATTCAGGCTCTTACAAAGAGAACACAAGATGGAGGCACGGAAGTCGTGGAAGCTAAGGCTGGAAAGGGTTCTGCAACTTTGTCAATGGCTTATGCTGGAGCCTTGTTCGCTGATGCTTGCCTCAAGGGCCTTAATGGGGTCCCAGATGTTGTTGAGTGCTCATTTGTGCAATCTAATGTCACTGAACTTCCTTTCTTTGCATCCAAGGTGAGGCTCGGAAGAAATGGTGTGGAGGAAGTCTTTGGCTTAGGTGCTCTTTCAGATTATGAGAAGCAAGGCCTTGAAAACCTCAAAGCTGAACTCAAATCATCCATCGAAAAGGGAATCAATTTTGCCAACCAGTAA 1092 0.4899 MMKQSMLRSLHSAVSRRSSHLTRRGYATEPVPERKVAILGAAGGIGQPLSLLMKLNPLVSSLSLYDIGGTPGVAADVSHINTRSEVVGYQGEDQLGKALEGADVVVIPAGVPRKPGMTRDDLFNINAGIVKSLAAAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVVGGHAGITILPLFSQVPSRSLAKQFPSFVKAFLATPQANLDDDVIQALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSNVTELPFFASKVRLGRNGVEEVFGLGALSDYEKQGLENLKAELKSSIEKGINFANQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0627 363 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 35 362 IPR010097 GO:0006099|GO:0030060
Lal2g0627 363 PANTHER MALATE DEHYDROGENASE 2 362 - -
Lal2g0627 363 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 179 360 IPR022383 GO:0016616
Lal2g0627 363 ProSitePatterns Malate dehydrogenase active site signature. 178 190 IPR001252 GO:0006108|GO:0016615
Lal2g0627 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 177 IPR036291 -
Lal2g0627 363 CDD MDH_glyoxysomal_mitochondrial 35 361 IPR010097 GO:0006099|GO:0030060
Lal2g0627 363 PIRSF Lac_mal_DH 30 361 IPR001557 GO:0016616|GO:0019752
Lal2g0627 363 Gene3D - 33 178 - -
Lal2g0627 363 Gene3D - 179 362 IPR015955 GO:0003824|GO:0016616
Lal2g0627 363 SUPERFAMILY LDH C-terminal domain-like 178 362 IPR015955 GO:0003824|GO:0016616
Lal2g0627 363 Pfam lactate/malate dehydrogenase, NAD binding domain 35 177 IPR001236 GO:0016491
Lal2g0627 363 PANTHER MALATE AND LACTATE DEHYDROGENASE 2 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0627 Lal-Chr2 3725282 3728309 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0627 2 3725282 3728309 Lal2g0627 2 3725282 3728309 ECH
Lal1g0593 1 3792552 3795842 Lal2g0627 2 3725282 3728309 LSH
Lal2g0627 2 3725282 3728309 Lal9g0541 9 3652503 3656013 LSH