Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0563 ATGGAAAATTCATGTTCAGATGCATCATTTTCGAATAGGTCATTAAGGAAGAAGTCCAAATTGCGGAACTACGACGAGGATGTAATGGATGAGCAATTAGTTGATGGTTTTAAGAAGAAAAATAAGACCCAAGAAGATATAGATAGAGAGACTGAAACCGAGGCCATGATCGCCTTCTCGCTAGGTTTCCCAATTGATGCTTTGCGTGAGGAGGAGATTAAAGCTGGGGTTGTAAAAGAATTGGGTGGTAAGGAGCAGAATGATTATATTGTTGTAAGAAATCATATATTGGCTCTGTGGAGGGAAAATGTAAAGATATGGTTGAGTAAACCACATATTAGAGAAACTGTGAGCAGTGATTGTGAACATTTGATTAATTCTGCCTATGACTTTCTTTTCTACAATGGTTACATCAATTTTGGTGTTCTGCCTTCTTTTACTTCCCAAATACCTGAGACAATTTTTGAAGGGGGTGTGATTGTTATTGGTGCTGGCCTTGCTGGGTTAGCAGCAGCAAGGCAGCTCTTGTCATTCGGTTACAAGGTTGCGATTTTGGAAGGCAGGGATCGTTCCGGTGGTAGGGTTTATACTAAAAAGGTGGGACATGAGGGTAATTTTGCTTTCGTAGATCTTGGTGGGAGTATTATCACTGGCATTGACGCTAATCCTTTGGCGGTTCTGGCTCGGCAGCTTTGTATACCGCTTCACAAAATCAGAGATAGATGCCCTTTGTTCAAGCCAAATGGGGAGCTGGTTGACAAGGAAATAGATTCACATGTCGAATACGTATTCAATAATTTGCTTGACAGAGTTATGGAACTGAGGCAAATTATGGGCGGCGGCTTCTCCAGAGATACCTCTCTTGGTTCAGTGTTGGAGAAACTCAAGCTTTTGTATGGTGCGGTTGGAAGTATTGATGAAAAACAGTTGCTTGAATGGCATTTTGCGAATTTGGAATATGCAAATGCTGGATGTCTTTCAAATTTATCAGCTGCCCATTGGGATCAAGATGATCCTTTTGAAATGGGTGGTGATCACTGCTTTCTTGCTGGAGGCAATGGGAGATTGATTAATGCTTTAAGTGAAGGGATTCCTATTTTTTATGGAAAGACTGTGAATACTATTAGATATGGAAACAATGGTGTCGATGTTGTTGTCGTCGGGGGCCAAGTTTTCCGTGCACAAATTGCCTTATGTACTGTGCCTCTTGGTGTTTTGAAGAAGAAAGCCATCAAGTTTGAACCTGAATTGCCTACTAGAAAATTGGAAGCAATTGAAAGGCTGGGGTTTGGGTTGCTGAACAAAGTTGCCATGGTGTTTCCGCATGTTTTTTGGGGCGAAGATCTGGACACATTTGGATGCCTCAATGGACAAAGCCATCAGCGTGGACAGTTCTTCTTATTCTATAGTTACCACACTGTTTCTGGAGGCCCAACACTTATTGCACTGGTGGCTGGTGAGGCTGCACAAACCTTTGAATCCACACATCCACATGTTTTGCTTCATCGGGTTTTGTTTGTCCTAAGAGGTATATTTGAACCTAAAGGTATCATCGTGCCTGATCCAATTCAGTCAGTTTGTACAAAATGGGGTGCCGATCCCCTTTCTTACGGTTCATACTCTCATGTTGGTGTGGGTTCTTCTGGTGGTGATTATGATATACTTGCAGAAAATGTGGGGAACCAACTGTTCTTTGCTGGTGAGGCTACAAGTAGGCAATATCCAGCAACTATGCATGGTGCTTTCTTAAGTGGCTTGCGAGAAGCTTCACGCATTTACAAGTTAACTGGGTGTACACAAAATCATCCTAGAAAGATCACACCTAAGAATATTGGACCCATCAATGATATACTAGTGGATTTATTCAAGAAACCTGATTTGGAGTTTGGGAGATTTTCTTTCATATTTGATCCATCATCAGAAAATCCCGACTCAATGGGGCTGCTGCGATTTCTTTACCCAGTTCCCGAACAATTGCCATTGCCGCTTTACATTATTATTTCTCGGGAACAGGTGCACCAGCTGCAACAAGTCACAGGAGTAGATCAAAGTGTGTTAGAATATTTGTCAAATAACCTTGGGTTGAAGTTTATGGGAACATTAGGTGTATGTAATGCAGCTAACTCTTTGATAACTAGCATTGGTAGCTCACGGAAATCCAAAGGGAAAAACCGGATAACTACCGGTAACACCATAGGGCCATAG 2205 0.4186 MENSCSDASFSNRSLRKKSKLRNYDEDVMDEQLVDGFKKKNKTQEDIDRETETEAMIAFSLGFPIDALREEEIKAGVVKELGGKEQNDYIVVRNHILALWRENVKIWLSKPHIRETVSSDCEHLINSAYDFLFYNGYINFGVLPSFTSQIPETIFEGGVIVIGAGLAGLAAARQLLSFGYKVAILEGRDRSGGRVYTKKVGHEGNFAFVDLGGSIITGIDANPLAVLARQLCIPLHKIRDRCPLFKPNGELVDKEIDSHVEYVFNNLLDRVMELRQIMGGGFSRDTSLGSVLEKLKLLYGAVGSIDEKQLLEWHFANLEYANAGCLSNLSAAHWDQDDPFEMGGDHCFLAGGNGRLINALSEGIPIFYGKTVNTIRYGNNGVDVVVVGGQVFRAQIALCTVPLGVLKKKAIKFEPELPTRKLEAIERLGFGLLNKVAMVFPHVFWGEDLDTFGCLNGQSHQRGQFFLFYSYHTVSGGPTLIALVAGEAAQTFESTHPHVLLHRVLFVLRGIFEPKGIIVPDPIQSVCTKWGADPLSYGSYSHVGVGSSGGDYDILAENVGNQLFFAGEATSRQYPATMHGAFLSGLREASRIYKLTGCTQNHPRKITPKNIGPINDILVDLFKKPDLEFGRFSFIFDPSSENPDSMGLLRFLYPVPEQLPLPLYIIISREQVHQLQQVTGVDQSVLEYLSNNLGLKFMGTLGVCNAANSLITSIGSSRKSKGKNRITTGNTIGP 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0563 734 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 33 721 - -
Lal2g0563 734 PANTHER FLAVIN MONOAMINE OXIDASE 33 721 - -
Lal2g0563 734 Pfam SWIRM domain 63 140 IPR007526 GO:0005515
Lal2g0563 734 Gene3D - 53 151 IPR036388 -
Lal2g0563 734 Pfam Flavin containing amine oxidoreductase 166 592 IPR002937 GO:0016491
Lal2g0563 734 SUPERFAMILY Homeodomain-like 50 150 IPR009057 -
Lal2g0563 734 Gene3D - 159 591 IPR036188 -
Lal2g0563 734 SUPERFAMILY FAD-linked reductases, C-terminal domain 429 542 - -
Lal2g0563 734 SUPERFAMILY FAD/NAD(P)-binding domain 159 594 IPR036188 -
Lal2g0563 734 ProSiteProfiles SWIRM domain profile. 48 149 IPR007526 GO:0005515
Lal2g0563 734 Gene3D - 241 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0563 Lal-Chr2 3397768 3401003 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Lal2g0563 Amino_oxidase 2.5e-87 CL0063