Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0713 ATGGAAGGAGGAGGACCAGAGAACTCCAATTCTGTATATAGAGAGTGTTTGAGAAACCATGCAGCCAGCCTCGGCAGCTATGCTACCGATGGTTGTGGAGAGTTTACGGTGGACAACATGTCACCCGAAAGCCTACAATGTGCAGCTTGCGGGTGTCATCGTAATTTCCACCGTAAACTCAAATACCCTCCAGGAGGGCATGGAGGGCTCATTAGCTATACCATCAGCCGTGATCCTGAGACCACGGCTGACATGATAGACTATTCTGGTGGTGGTGGTGATGGTAGTGATGGTAGATTGTTAGAGTTAGATGGAAGCGGGAAGAAGCGATTCCGGTCGAAATTCACAGCAGATCAGAAGGAGAAGATGCTGGCATTTGCTGAGAAGCTTGGGTGGAAGCTGCAAAGGAAGGATCTTGATGAAGAGATAGAGAGGTTTTGTAGAAGTATTGGAGTGAGTAGACAAGTGTTCAAAGTGTGGATGCATAACCATAAGAACTCTTCTTCATCATCTTCTGCATCTACTGGCAATGTTTCATCTCTTACTCAGTAA 552 0.4656 MEGGGPENSNSVYRECLRNHAASLGSYATDGCGEFTVDNMSPESLQCAACGCHRNFHRKLKYPPGGHGGLISYTISRDPETTADMIDYSGGGGDGSDGRLLELDGSGKKRFRSKFTADQKEKMLAFAEKLGWKLQRKDLDEEIERFCRSIGVSRQVFKVWMHNHKNSSSSSSASTGNVSSLTQ 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0713 183 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 174 - -
Lal23g0713 183 Gene3D - 95 172 - -
Lal23g0713 183 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 108 166 IPR006455 -
Lal23g0713 183 MobiDBLite consensus disorder prediction 164 183 - -
Lal23g0713 183 Pfam ZF-HD protein dimerisation region 12 60 IPR006456 -
Lal23g0713 183 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 8 174 - -
Lal23g0713 183 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 13 59 IPR006456 -
Lal23g0713 183 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 13 60 IPR006456 -
Lal23g0713 183 SUPERFAMILY Homeodomain-like 99 166 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0713 Lal-Chr23 9770205 9770756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0713 13 167 ZF-HD Transcription Factor Family AT4G24660 46.429 9.28e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal23g0713 ZF-HD_dimer 1.3e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0713 23 9770205 9770756 Lal23g0713 23 9770205 9770756 ECH
Lal16g0920 16 6096800 6097369 Lal23g0713 23 9770205 9770756 LSH
Lal23g0713 23 9770205 9770756 Lal8g0487 8 3306824 3307294 PCT
Lal8g0487 8 3306824 3307294 Lal23g0713 23 9770205 9770756 PCT