Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0666 ATGGCCATGCCTAAAGAGAATGATGATAAAGAGTTTCATGGGAAGAAGAGGCTCAAAACCATGAAGAATGAACAAAAACAAGTTGTTGAAGTAGCAGAAGAAGAAGATCATGCATCAATAGTAGAAGAAGAAGAAGAAGAAACTGAACTTCCACTGCAACCAGGGTTGTTCTTGTACCCAACAATACCATCATCTTTTGTTGTTTGTGATGCACTTGAACTTGATTTTCCAATCATCTATGTCAACAAGGTCTTTGAAATCTCCACTGGGTATCGTGCTGATGAGGCCTTGGGTCGAAACTGCCGGTTCTTACAGTATAGGGATCTTCGTGCTCAGAGGCGGCACCCTTTGGTGGATCCTGTTGTTGTATCTGAGATTAGAAGATGTCTCCAAGAAGGTATAGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTGAACAGACTGAGACTAGCACCAATTCATGATGATGATGGAACTGTAACACACGTAATCGGTATCCAACTATTTTCTGAAGCAAATATAGATCTGAACCATGTTTCATATCCAGTTTTCAAAGAGACTTGCAATCAAGATGTCGATAAGAATTTTATGTGTTTTCGAAAGAGTGGAGAATCATTGTATACTCAGCAGCACCAAGAGATGTGTGGTATTCTTCAGCTTTCTGATGAAGTATTGGCTCACAACATTTTGTCGCGCTTGACACCTAGGGACATTGCATCCATTGGATCTGTATGCAGGAGGATTCGTCAATTAACAAAGAACGAGCATGTTAGGAAGATGGTGTGTCAAAATGCGTGGGGCAAAGAAATGACAGGTACATTGGAAAGGATGACCAAGAAGTTGGGATGGGGTCGTCTGACTCGAGAACTTACAACTCTCGAGGCTGTTTGTTGGAGGAAAATGACAGTGCGTGGTGCAGTGGAGCCTTCACGCTGCAACTTCAGTGCTTGTGCTGCAGGAAACCGACTTGTGCTGTTTGGAGGCGAAGGAGTAGATATGCAACCTATGGATGATACTTTTGTTCTAAATCTCGATGCTAAAAATCCAGTATGGCGCAGGGTTAGCGTGAAAAAATCCCCACCTGGAAGATGGGGCCATACACTGTCGTGCTTGAACGATTCATGGTTGATTGTTTTTGGTGGATGTGGTAGACAAGGATTGCTCAATGATGTGTTTGTTATAGATTTGGATGCTCAACAGCCAACATGGACCGAAATCTGTGGTGGAACCCCACCACTTCCAAGATCATGGCACAGCTCTTGCACAATTGAAGGGTCCAAATTGGTTGTTTCCGGTGGATGTACAGACGCCGGGGTACTTCTTAGTGACATACATTTACTTGACCTCGCAACAGAGAATCCAACATGGAAAGAGATTCCAACTTCTTGGGCTCCTCCTTCTCGGTTGGGGCACTCACTCTCTGTCTACGGAAGAACGAAAATTCTCATGTACGGTGGACTCGCCAAGAGCGGACACTTGCGCTTACGATCCAGCGAGGCATATACCATTGACTTAGAAGATGAACAGCCACAATGGAGACAACTAGAATGCAATGCATTCACTGGATCGGCTAGTCAAACTGCTGTGGTTCCGCCTCCTAGACTTGACCATGTTACTGTGAGCATGCCATGTGGGAGGGTCATTATCTTCGGTGGTTCAGTTGCAGGTCTTCATTCACCATCTCAGCTCTTTCTCTTGGACCCTTCAGAGGAGAAACCATCATGGAGGATCCTCAATGTTCCGGGGCAACCACCTAAATTTGCATGGGGTCATAGCACTTGTGTTGTTGGAGGGACAAGGGTGTTGGTATTGGGTGGACACACTGGTGAGGAATGGATACTGAATGAGGTGCATGAGTTGTGCTTGGCAAGTAGACAAGACTCTGACCTGTGA 1911 0.45 MAMPKENDDKEFHGKKRLKTMKNEQKQVVEVAEEEDHASIVEEEEEETELPLQPGLFLYPTIPSSFVVCDALELDFPIIYVNKVFEISTGYRADEALGRNCRFLQYRDLRAQRRHPLVDPVVVSEIRRCLQEGIEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNHVSYPVFKETCNQDVDKNFMCFRKSGESLYTQQHQEMCGILQLSDEVLAHNILSRLTPRDIASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEMTGTLERMTKKLGWGRLTRELTTLEAVCWRKMTVRGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPVWRRVSVKKSPPGRWGHTLSCLNDSWLIVFGGCGRQGLLNDVFVIDLDAQQPTWTEICGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDIHLLDLATENPTWKEIPTSWAPPSRLGHSLSVYGRTKILMYGGLAKSGHLRLRSSEAYTIDLEDEQPQWRQLECNAFTGSASQTAVVPPPRLDHVTVSMPCGRVIIFGGSVAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNEVHELCLASRQDSDL 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0666 636 Pfam F-box domain 223 260 IPR001810 GO:0005515
Lal23g0666 636 SUPERFAMILY PYP-like sensor domain (PAS domain) 66 173 IPR035965 -
Lal23g0666 636 Pfam Kelch motif 541 588 IPR011498 GO:0005515
Lal23g0666 636 SUPERFAMILY Kelch motif 304 510 IPR015915 GO:0005515
Lal23g0666 636 Gene3D - 525 634 IPR015915 GO:0005515
Lal23g0666 636 Pfam Galactose oxidase, central domain 431 482 - -
Lal23g0666 636 Pfam Galactose oxidase, central domain 382 429 - -
Lal23g0666 636 MobiDBLite consensus disorder prediction 1 23 - -
Lal23g0666 636 SUPERFAMILY Kelch motif 524 628 IPR015915 GO:0005515
Lal23g0666 636 SUPERFAMILY F-box domain 218 292 IPR036047 GO:0005515
Lal23g0666 636 Pfam Galactose oxidase, central domain 317 366 - -
Lal23g0666 636 Coils Coil 15 35 - -
Lal23g0666 636 TIGRFAM sensory_box: PAS domain S-box protein 75 172 IPR000014 -
Lal23g0666 636 CDD PAS 62 172 IPR000014 -
Lal23g0666 636 Gene3D PAS domain 58 184 - -
Lal23g0666 636 Gene3D - 292 524 IPR015915 GO:0005515
Lal23g0666 636 SMART pac_2 137 178 IPR001610 -
Lal23g0666 636 Pfam PAS domain 73 172 IPR000014 -
Lal23g0666 636 PANTHER ADAGIO PROTEIN 3 18 633 - -
Lal23g0666 636 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 18 633 - -
Lal23g0666 636 Gene3D - 216 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0666 Lal-Chr23 9355312 9358888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0666 61 174 AGC Kinase Gene Family AT5G58140 42.105 2.33e-20 94.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0666 23 9355312 9358888 Lal23g0666 23 9355312 9358888 ECH