Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0970 ATGCAGAAACCTGAACCGGGTTTTCTTTTCTCTATCGGCTTTTTTCTTTACGTTTTTGTTCTCTCTGTTCATTCTCAGAACGATGATTATTCTGTTATGGCTATTTTGAAAAAAGCGCTTAATTCAACAAGTGATCTTCAATGGAATGGTCCAGATATTTGTAAATGGGAACATATTCAGTGCAATTCAGGAAGAGTTACTGCAATTCAGATTAGTTCATTGAATCTTCAAGGTACTTTGCCTAAAGAACTTATTCAACTCACACAATTGCAAATTTTTCAATGCAACAACAATGGTTTAACCGGTCCGGTTCCGTATATGCCAAAATCTCTGCAGAGATTGGCTATCAACAACAACAATTTCAATTCCATTCCGACTGATTTCTTCAAAGGTATGACTAATATGTTAGATGTCAGAATTGACTATAACCCTTTTGGTCAATGGAATATCCCTGATAGCCTTCAAGATTGTGTTTCCATTACGAGTTTTTCGGGTATGAATGCGAGTTTTGTTGGGAAAATTCCGGCTTTTTTGGGGAAAGATGGTCCTTTGCCAGCTTTGGTTTATTTAGCGTTGTGTTTTAATAATCTCGAGGGCGAGTTGCCGGGTAGTTTTTCGGGGAGTTCTATGGAGAGGCTTTTGATTAATGGTCAGCAAAGTATGAATAAACTAAATGGGACTATTGCTGTGTTACAGAATATGACATTTTTGAAACAAATTTGGATACATGGTAATTCATTTACAGGTCCTATACCCGATTTGTCGAACCATGATCAGTTGTATGATGTGAGTTTGAGGGATAACCAGTTAACTGGTGTTATTCCACCCTCTCTGATTGCTCTACCATCTCTCACTGTTGTGAATTTAACCAATAATTATCTTCAAGGTTCACCTCCCAAGTTCAAAGATGGGGTTAGAGTTGATAATGATATGGTGAGGGGGAGTAATAGCTTTTGCACTAAGAAGATTGGTGAGCCATGTAGTCCTCTTGTCAATGCTTTACTTTCTGCTGTTGAACCTCTTGGTTATCCTAAAAAGCTTGCGGATTCGTGGAAGGGTGATGATCCTTGTGTCGGGGGTAATAATGAATGGCTCGGGATTGTTTGTTCTGCGTCTCCTGTTAATATTTCATTAATCAATTTTCAGAGCATGGGTTTTTCTGGCAAGATTTCTCCTAACTTTGCTAGCCTTACTTCTGTGACAAAGTTGCTTTTTGCTAACAATAATCTAACTGGTATCATACCGAGTGAACTTACTAGTATGCCTCTACTGAAAGAGCTAGATGTTTCAAATAATAATTTATATGGTAAGGTACCATTGTTCCGTCCAGAAGTGACTATTAAGACTGAGGGAAATCCTAATATTGGAAAGGATCCTCCTGCGCCGGTTACTGGAGATAATTCTGGAGGCAAAGGCAAGAACCATACTGTTGGAATCATTATCGGCATTGTGGCGGGGGTTGTTATTTTACTTGGTCTCGGGGCTGTTCTGTATATCAAGTCTAGTAGAAAAAAACTTAAGCATGTTAGCGAAGTTCAAATTCCAAATGAAATAGAGGTGCATCCTCATCATTTTGAAGGTGGAAATGCTAAGAAGGCAAGTGTTGCAGGTGGAGGAATTGGTTCATCTAGTCCATCAAGCAGTGCTCACAATGCGGAAGCTGGTAATATGGTATTCTCAATTAAAGTTTTGAGAGAAGTTACAGACAATTTTAATCAAAGAAACATATTGGGGAGGGGTGGTTTTGGCACTGTATACAAGGGAGAATTGCACGATGGAACGAAGATAGCTGTGAAAAGGATGGAATCTGGTATCATGGGTGAAGGTGAAAAAGGGCTGAGTGAGTTCAAGTCTGAAATTGCAGTACTTACTAAGGTTCGACACAGACATTTGGTCGCACTCCTAGGCCATTGCTTGGATGGAAATGAGAGGCTCCTTGTGTATGAATACATGCCTCAGGGGCCTCTTAGCAATCATTTGTTTGATCGTAATGAAGATGAAGAGTCAAAACCACTAGAATGGAAGAGAAGGCTTATCATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTCTGGCCCAGCAAATATTTATCCACAGGGATCTGAAACCATCAAACATCTTGCTTGGGGATGATATGCGCGCTAAAGTATCAGACTTTGGACTGGTTCGACTTGTTCCTGAAGGACAAGCCTCGTTCGAGACTAGACTTGCTGGAACTTTTGGATATCTGGCACCAGAGTATGCAGTCACTGGACGTGTTACAACAAAGGTTGATGTATATAGCTATGGTGTGATTCTTATGGAGATGATAACCGGAAGGAAAGCAATCGATAATAGCCAACCAGAAGAGAATGTCCACCTTGTTACATGGTTCCGTAGGATGCTACTGAACAGAGATTCATTTCAAAAGATCATCGACCCAGCACTTGATGTCGAAGAGGAAGCCTTAGACAGTTTCAGAACTGTTGCCGAGCTGGCTGGCCACTGCTGCGCTAGAGAACCTTATCAGCGACCCGATATGAGTAATGTAGTGAATGTACTAGCACCTCTTGTCGAGATCTGGAAGCCTTCAGAATCTACTCCTGCCGACATATACGGACTTGACTTGGATATGTCATTGCCGCAAGCACTCCATAATTGGCAAGCTTTAGATGGAATGAGCACCATTAATACATCATCTTCGACAATGCTTCGTACCAGAGACTATAATACCCAGTCAAGCTTACCTGCTGCTAGTGGATTTGCAAATTCCTTTAATTCAATGGATGCAAGATGA 2784 0.4073 MQKPEPGFLFSIGFFLYVFVLSVHSQNDDYSVMAILKKALNSTSDLQWNGPDICKWEHIQCNSGRVTAIQISSLNLQGTLPKELIQLTQLQIFQCNNNGLTGPVPYMPKSLQRLAINNNNFNSIPTDFFKGMTNMLDVRIDYNPFGQWNIPDSLQDCVSITSFSGMNASFVGKIPAFLGKDGPLPALVYLALCFNNLEGELPGSFSGSSMERLLINGQQSMNKLNGTIAVLQNMTFLKQIWIHGNSFTGPIPDLSNHDQLYDVSLRDNQLTGVIPPSLIALPSLTVVNLTNNYLQGSPPKFKDGVRVDNDMVRGSNSFCTKKIGEPCSPLVNALLSAVEPLGYPKKLADSWKGDDPCVGGNNEWLGIVCSASPVNISLINFQSMGFSGKISPNFASLTSVTKLLFANNNLTGIIPSELTSMPLLKELDVSNNNLYGKVPLFRPEVTIKTEGNPNIGKDPPAPVTGDNSGGKGKNHTVGIIIGIVAGVVILLGLGAVLYIKSSRKKLKHVSEVQIPNEIEVHPHHFEGGNAKKASVAGGGIGSSSPSSSAHNAEAGNMVFSIKVLREVTDNFNQRNILGRGGFGTVYKGELHDGTKIAVKRMESGIMGEGEKGLSEFKSEIAVLTKVRHRHLVALLGHCLDGNERLLVYEYMPQGPLSNHLFDRNEDEESKPLEWKRRLIIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLVPEGQASFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRKAIDNSQPEENVHLVTWFRRMLLNRDSFQKIIDPALDVEEEALDSFRTVAELAGHCCAREPYQRPDMSNVVNVLAPLVEIWKPSESTPADIYGLDLDMSLPQALHNWQALDGMSTINTSSSTMLRTRDYNTQSSLPAASGFANSFNSMDAR 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0970 927 SUPERFAMILY Protein kinase-like (PK-like) 558 870 IPR011009 -
Lal22g0970 927 Gene3D Ribonuclease Inhibitor 26 325 IPR032675 -
Lal22g0970 927 ProSitePatterns Protein kinases ATP-binding region signature. 577 599 IPR017441 GO:0005524
Lal22g0970 927 CDD STKc_IRAK 577 853 - -
Lal22g0970 927 ProSiteProfiles Protein kinase domain profile. 571 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal22g0970 927 Gene3D Transferase(Phosphotransferase) domain 1 651 863 - -
Lal22g0970 927 SUPERFAMILY L domain-like 339 439 - -
Lal22g0970 927 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 15 927 - -
Lal22g0970 927 MobiDBLite consensus disorder prediction 449 469 - -
Lal22g0970 927 PANTHER OSJNBA0070M12.3 PROTEIN 15 927 - -
Lal22g0970 927 Pfam Protein tyrosine and serine/threonine kinase 574 849 IPR001245 GO:0004672|GO:0006468
Lal22g0970 927 SMART LRR_typ_2 281 303 IPR003591 -
Lal22g0970 927 SMART LRR_typ_2 109 131 IPR003591 -
Lal22g0970 927 SMART LRR_typ_2 421 443 IPR003591 -
Lal22g0970 927 SMART LRR_typ_2 397 420 IPR003591 -
Lal22g0970 927 SMART LRR_typ_2 184 207 IPR003591 -
Lal22g0970 927 SUPERFAMILY L domain-like 33 303 - -
Lal22g0970 927 Gene3D Phosphorylase Kinase; domain 1 540 650 - -
Lal22g0970 927 Gene3D Ribonuclease Inhibitor 330 459 IPR032675 -
Lal22g0970 927 SMART serkin_6 571 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal22g0970 927 Pfam Leucine rich repeat N-terminal domain 333 370 IPR013210 -
Lal22g0970 927 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Lal22g0970 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0970 Lal-Chr22 8107177 8111172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0970 66 850 Receptor kinase-like Gene Family AT5G07280 31.333 8.14e-85 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Lal22g0970 Pkinase 1.8e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0970 22 8107177 8111172 Lal22g0970 22 8107177 8111172 ECH
Lal22g0970 22 8107177 8111172 Lal18g0523 18 4320145 4324084 LSH