Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0965 ATGTCAGCCTTCAACGCTCTTAGATCATCCAAATTTATCTCATGGAAACCCACCGGGAGGCTTCAGAAAACCCTAGCGGGTTGCGTAGAACGAAGGGGTAAGGGTTTACATTCCGGTGAAGTTTCCACCGTCAGATTGTGCCCTGGTTTTGCCGGCGAAGGGAGGAGCTTTTATTTTCGATCCAATTCCATTCCGGCTTCTGTGGATTTCGCTCAAGTGTCGCCTCTCTGCACTACTTTGAGTAAAAGCGGTTTTCGGATTCGAACGGTGGAGCACTTGCTTTCTGCTTTGGAGGCTTCTGGTGTTGATAATTGTAGGATTGAGGTAGAGAATTTGGATGGTGAAGGGGATGATGTGGAGATTCCTATATTTGATGGGTCAGCAAGGGAATGGGTGGAATCAGTAGAAGAAGTTGGTTTAAAGGAAGCAACTGATCGTGAAGGCAAAAGTTGTGAGAAAATAGCGCCACATGTGAATGAACCAGTGTATGTTTGGAGGAACGATTCTTTTGTTGCTGCATTTCCTTCAGAAGTGGTTCAAATAACTTATGGCATCAGCTTTCCACAGGCACCTGCTATTGGCTGCCAGTGGTTTTCCACAAACCCCCTGGACAATTTGGTTTATTCCATGCAAATAGCTTTGTCAAGAACCTTCTGCATTTATGAGGAGATGCTTTGTTGCACGGGTATGCTCTGTTGGCCTCCAAACTCGCACCGGTCCATGCATGATATTGCCACCAGTCCACCACCAGATCATAATCCTCATGCGGACACTAACGGTGCACTCACTGCTGAGAGGCTCACCATAGTGCAGCTCCAAACCAGTATCACCAGGGCAATGAAGGAAACTGGGGTGCTGGGACACGGAGATTCGATCCGACCGTTGCTGCTGCAAAAACCATCAGATTGTGATCCCCATATAGTGGTTGAGCAAATGCGTAAGGCTGGACTTATTAAAGGAGGTTCTCTAGAAAATGCCATTGTTTGCAGTACCAGTAAAGGTTGGTTGAATCCCCCTTTGCATTTCAGTGATGAACCGTGTCGTCACAAAGTATTGGATCTTATCGGCGATCTCTCACTTTCTGCTCAGTTTGGGAATCAAGGACTCCCAGTGGCACACATTGTAGCTTACAAGGCATGGTCCTCTGGTCTTTTGTTATTCCCTACATTATGTATTCTCATTATCAGTTTGACTATTATGGGTGGGCATGCATTGCATGCTGATTTGGCACGTCGCCTAATGGGAATGATTTGA 1254 0.4641 MSAFNALRSSKFISWKPTGRLQKTLAGCVERRGKGLHSGEVSTVRLCPGFAGEGRSFYFRSNSIPASVDFAQVSPLCTTLSKSGFRIRTVEHLLSALEASGVDNCRIEVENLDGEGDDVEIPIFDGSAREWVESVEEVGLKEATDREGKSCEKIAPHVNEPVYVWRNDSFVAAFPSEVVQITYGISFPQAPAIGCQWFSTNPLDNLVYSMQIALSRTFCIYEEMLCCTGMLCWPPNSHRSMHDIATSPPPDHNPHADTNGALTAERLTIVQLQTSITRAMKETGVLGHGDSIRPLLLQKPSDCDPHIVVEQMRKAGLIKGGSLENAIVCSTSKGWLNPPLHFSDEPCRHKVLDLIGDLSLSAQFGNQGLPVAHIVAYKAWSSGLLLFPTLCILIISLTIMGGHALHADLARRLMGMI 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0965 417 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 22 224 IPR004463 GO:0008759|GO:0009245
Lal22g0965 417 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 309 379 IPR004463 GO:0008759|GO:0009245
Lal22g0965 417 Gene3D lpxc deacetylase, domain 2 157 229 IPR011334 GO:0008759|GO:0009245
Lal22g0965 417 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 2 224 IPR004463 GO:0008759|GO:0009245
Lal22g0965 417 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 309 381 IPR004463 GO:0008759|GO:0009245
Lal22g0965 417 Gene3D lpxc deacetylase, domain 1 20 147 IPR015870 GO:0008759|GO:0009245
Lal22g0965 417 SUPERFAMILY Ribosomal protein S5 domain 2-like 309 379 IPR020568 -
Lal22g0965 417 SUPERFAMILY Ribosomal protein S5 domain 2-like 21 143 IPR020568 -
Lal22g0965 417 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 224 IPR020568 -
Lal22g0965 417 Gene3D lpxc deacetylase, domain 2 306 416 IPR011334 GO:0008759|GO:0009245
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0965 4 224 Carbohydrate Esterase AT1G24793 58.824 6.42e-91 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0965 22 8029091 8039821 Lal22g0965 22 8029091 8039821 ECH