Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0371 ATGTCGCATTCAGGTAACCCCATCTCCGATGTGGTTGGGTTTGGGTTGAACGAGTCGATAACCGATCGTTTCCGTGACTCAGTGAACTGCGGCGAGTTCAACAAGCCTGATTTCAGAGAACTCGATCTGGGTTCACCTATTTCCCCATTACGAACCCGTTCACATGGGTCCGGACCCGTTGCTAGTAGTAGTTCAAGTTCTTCTGGATCCTTCTCTGGAGGTAGAACCGGACAAAACTCGGTTCCTAAAAGATCTGAATCTGCACCAGCTATTTATAATACCAACAACTCCGGTGAACTCTCCGGTTCCGGTGAGAATAGTCCGAGCAATGCTCGTGGCGGCAGCGGTTCTAAATCGGGTCATACAAGATCCAATTCAGGAACTGCTGCCCCGTTAATTTATTCCGGTCAGAGTGTGAATTCGCCGGTTTTGAATGTGCTTCCCACTGGAAACATATGCCCCTCTGGTCGGATCGTGAAGACCGGGATGACCGCGAATCGGGGCTCGAGGAGCGATGTTTTGGGAACTGGTACGGGGAATTATGGCCATGGGAGCATAATGCGGGGTGGGAAAGAGGTTTTGGGTTTGGGAAATGTGAAGGGTATTGGGATTGGGAGTAATGAGATGGTGAAGAGAGGAGTGCAGAGTTTGGATCCGGAGGAGTTGAAGAGAGTAGGGAATGAGAATTATAAGAGGGGGCATTTTGTGGAGGCATTGAGTTTGTATGATCGGGCTATTTCGTTGTCTCCGGGGAGCGCTGCTTACCGGAGCAACCGGGCTGCAGCGTTGACGGGGTTAGGAAGGTTGGTGGAGGCAGTGAGGGAGTGTGAGGAGGCTGTGAAGTTGGATCCTAATCATGTCAGGGCTCATCATCGTTTGGCAACTCTTTTCCTCAGGCTAGGACAAGTTGAGAATGCTAGGAAGCATTTAGGTCATCCCGGGTTACAGCCGGATCCATCTCAGATGCAGAAGTTTCAAATTGTGGAAAAACATATAAGCAAATGTGCAGATGTAAGGAGGGTAGGAGATTGGAGAAGTGTTTTGAGGGAAGTTGATGCTGCTATTGCTGCTGGAGCCGACTCTTGTCCTCAGCTCTTTATGTGTAGAGCTGAAGCCCTTTTGAAGCTCCACCAAATTGATGATGCAGAATCAATTTTATCGCAATCTCTCAAATCAGAACGGCATACTAGTCCTTCTTCAGAAGCAAGATTTTTTGGGATGATTTCTGATGCTTATTCCTACTTTATCAGAGCTCAGATTGAGTTGGCATTGGGAAGGTTTGAGAATGCAGTTACGGCAGCAGAGAAAGCCAGTCAGATTGACTCCCGAAATGTTGAAGTTGCTGTCTTGCTCAACAATGTAAGGATGGTAGCAAGAGCTCGAGTGCATGGCAACAATCTTTTTAAATCTGAAAGGTTCACTGAAGCTTGCTCGGCATATGGTGAAGGTTTGAAGCTGGACCCTTCAAATTCCGTTTTATATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGACAATGGGAAAGATCAATTGAAGATACCAATCAAGCATTACTTATCCAACCAAAATACACAAAAGCCCTTCTTCGTAGGGCAGCTTCAAACAACAAGCTTGAAAGGTGGGAAGAAGCTGTGAAAGATTATGAGGTGTTGCGGGGAGAACTTCCAAACGATAATGAAGTTGCAGAAGCTCTTTTTCATGCACAAGTTGCACTGAAGAAATCACATGGGGAAGAAGTATGCAATTTAAAATTTTGTGAAGTGGAAGAAGTATCAGGTCTTGATCAGTTTAGAGCCGCGATATCTTTACCAGGTGTGTATGTTGTTCATTTTAAAATTGCATCGAATTCGCAATGCAAGCAAATATCGCCATATGTTGATACACTATGTGGTCACTATCCATCTATTAAATTCATCAAGGTGGATATTCAAGAATGTCCAACAATTGCCACTGCTGAGAATGTTAGGATTGTGCCAACCTTCAAGATATACAAAAATGGAAATCGAGTGAAGGAAATCGTATGCCCTAGTCGTGATATGTTGGAACACTCTGTGAGGCATTACAGCTTATAG 2073 0.4534 MSHSGNPISDVVGFGLNESITDRFRDSVNCGEFNKPDFRELDLGSPISPLRTRSHGSGPVASSSSSSSGSFSGGRTGQNSVPKRSESAPAIYNTNNSGELSGSGENSPSNARGGSGSKSGHTRSNSGTAAPLIYSGQSVNSPVLNVLPTGNICPSGRIVKTGMTANRGSRSDVLGTGTGNYGHGSIMRGGKEVLGLGNVKGIGIGSNEMVKRGVQSLDPEELKRVGNENYKRGHFVEALSLYDRAISLSPGSAAYRSNRAAALTGLGRLVEAVRECEEAVKLDPNHVRAHHRLATLFLRLGQVENARKHLGHPGLQPDPSQMQKFQIVEKHISKCADVRRVGDWRSVLREVDAAIAAGADSCPQLFMCRAEALLKLHQIDDAESILSQSLKSERHTSPSSEARFFGMISDAYSYFIRAQIELALGRFENAVTAAEKASQIDSRNVEVAVLLNNVRMVARARVHGNNLFKSERFTEACSAYGEGLKLDPSNSVLYCNRAACWFKLGQWERSIEDTNQALLIQPKYTKALLRRAASNNKLERWEEAVKDYEVLRGELPNDNEVAEALFHAQVALKKSHGEEVCNLKFCEVEEVSGLDQFRAAISLPGVYVVHFKIASNSQCKQISPYVDTLCGHYPSIKFIKVDIQECPTIATAENVRIVPTFKIYKNGNRVKEIVCPSRDMLEHSVRHYSL 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0371 690 Gene3D Glutaredoxin 583 689 - -
Lal20g0371 690 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Lal20g0371 690 SMART tpr_5 411 444 IPR019734 GO:0005515
Lal20g0371 690 SMART tpr_5 219 252 IPR019734 GO:0005515
Lal20g0371 690 SMART tpr_5 253 286 IPR019734 GO:0005515
Lal20g0371 690 SMART tpr_5 458 490 IPR019734 GO:0005515
Lal20g0371 690 SMART tpr_5 525 558 IPR019734 GO:0005515
Lal20g0371 690 SMART tpr_5 363 396 IPR019734 GO:0005515
Lal20g0371 690 SMART tpr_5 491 524 IPR019734 GO:0005515
Lal20g0371 690 SUPERFAMILY TPR-like 218 447 IPR011990 GO:0005515
Lal20g0371 690 Gene3D Tetratricopeptide repeat domain 218 577 IPR011990 GO:0005515
Lal20g0371 690 SUPERFAMILY Thioredoxin-like 494 688 IPR036249 -
Lal20g0371 690 Pfam Tetratricopeptide repeat 229 286 - -
Lal20g0371 690 Pfam Tetratricopeptide repeat 412 442 IPR019734 GO:0005515
Lal20g0371 690 MobiDBLite consensus disorder prediction 27 133 - -
Lal20g0371 690 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 19 688 IPR044534 -
Lal20g0371 690 CDD TRX_family 595 682 - -
Lal20g0371 690 Pfam Thioredoxin 596 681 IPR013766 -
Lal20g0371 690 Coils Coil 531 551 - -
Lal20g0371 690 ProSiteProfiles TPR repeat profile. 491 524 IPR019734 GO:0005515
Lal20g0371 690 MobiDBLite consensus disorder prediction 50 133 - -
Lal20g0371 690 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 19 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0371 Lal-Chr20 2977423 2982496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0371 456 579 U-box Gene Family AT3G07370 30.000 1.13e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0371 20 2977423 2982496 Lal20g0371 20 2977423 2982496 ECH
Lal20g0371 20 2977423 2982496 Lal11g1461 11 17911908 17915954 LSH
Lal20g0371 20 2977423 2982496 Lal1g1620 1 18612298 18616289 LSH
Lal20g0371 20 2977423 2982496 Lal1g0598 1 3831347 3835015 PCT
Lal20g0371 20 2977423 2982496 Lal9g0546 9 3691734 3695475 PCT