Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0355 ATGGATCAAATGACAGATTCGGAAATGGATCAACAGAATCAAGGATATTTTCACTCTGAACCCTGTATCGTTTTGAGAGGCTCCACGAGTTCCTCACATCCGAATATCCAAACAATGGTGTCGGCTTCAGGGAACACAACTAATGTTGCTTCCTACTATTTACAAGATGCTTATGACAATAGTAGAGGGTATGGGTTTGCACAATACAATGGCATTCAGCCTCAACATAATCTTGACATGGGTGGTGCACTGGCAGCCAACATATATTATTCTGGCATGAATCCTTCTTCTAGTACTGGTGTATTTACCCCTTTGGCTTTAAATCACCAAGTCTCTGATCAGGTGCCAGGTTCAAGCACGTATGCAGTCTCCGGAAGTTCTTCAGATAATTTTGGAAGAAGCAGTGCTTTCATGGATGATGCCAGAGCTCCATACAAACGGAAAGTTGCTGAAGGGATCAGAGGAAATCACCACTATTTTAATGCTCCAGCTAGTTCTTCTGTTGCTCCCCCTAATGCAAGACATGCTGATGGGGTCGCTATGATGGATAATGCATCATTTTCTTCGCACATGCCATCACTCGTGGAAGTAGGACCGCACGGTAGTGCATGGAACAGGTCAAGTGAGCCTATTATGGTGCATGACCACAACCATTTGATTCGTGGAAATTATTTAGGGCAGCACTTTCTGCCAGCTCCTCCTCCATGGTTTGAGCAGCAGTTGAACAATGATGGCCATGCCACCGCCTGGAGTCAACCTCTTTCAATGCCTTATATGCAAGGCTTGAGTCTCAGAGGCTGCAAGCCTGCAACAGTTGGACTTCGTCTTAGGATTGTCATTGGGCCCTTTAGATGCTTGTTGTTTGTCCAAAATTGCCAAGCACCAAATGTTAATGGAAGTTCATTAGAGAATGCAAGTATGGGTTTGCAGAGATATCATGACACATCCAGCAACAGAAATGGCCTCAGGTTTCCTCATCCCCCTCCTGCCAACCATCCACCCCATAATTATCATCATCCTGCGCTACCCATGCAAGGAGTAAGAGGGCACAATATCCACTTTCACCCTCCGGTAACTCCAGCTTCATTTAGGGTTCCTACCAATCCTTCACGCAGTGCCATGATCCCTGCACAGACTGGTTTTGAGATGGTTCCTAGGCATGTTGGCCCTGTTCCGTCAGCAGGCCTACGTATATATCGACCTCATAGAGCAATCATGCCCGATGCAACTCTCGGACACAGAAATCTCCCCTCCATGGGATTTCTCCAAGTGGATGATGTTGCTTTGATCGATGAAGTGGGAAATTTGGTTGACCATCACAGAGATATGCGCTTGGACATAGAGGATATGTCGTATGAGGCAAGTACACAAGATCTTCTTGCATTGGGTGAGCGGATTGGCAAAGTAAGCACTGGTTTATCAGAGGAAACAATTACAGCTCAAATGAAGACGAAGACCTATTTAGCACCCGCCACCGCTATTAATTTGGAGGAGCCAGCTTCCGACAATCAGGAATCTGATTCTTGCATAATATGTCAGGAGGAATATAAGCACCAAGAGAAGATTGGAGTTCTTGGATGTGAGCATGAATATCATGCAGATTGCTTAAAGAAATGGTTGCTTGTGAAAAATGTATGCCCAATATGCAAATCAGAAGCCTAG 1662 0.4525 MDQMTDSEMDQQNQGYFHSEPCIVLRGSTSSSHPNIQTMVSASGNTTNVASYYLQDAYDNSRGYGFAQYNGIQPQHNLDMGGALAANIYYSGMNPSSSTGVFTPLALNHQVSDQVPGSSTYAVSGSSSDNFGRSSAFMDDARAPYKRKVAEGIRGNHHYFNAPASSSVAPPNARHADGVAMMDNASFSSHMPSLVEVGPHGSAWNRSSEPIMVHDHNHLIRGNYLGQHFLPAPPPWFEQQLNNDGHATAWSQPLSMPYMQGLSLRGCKPATVGLRLRIVIGPFRCLLFVQNCQAPNVNGSSLENASMGLQRYHDTSSNRNGLRFPHPPPANHPPHNYHHPALPMQGVRGHNIHFHPPVTPASFRVPTNPSRSAMIPAQTGFEMVPRHVGPVPSAGLRIYRPHRAIMPDATLGHRNLPSMGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEASTQDLLALGERIGKVSTGLSEETITAQMKTKTYLAPATAINLEEPASDNQESDSCIICQEEYKHQEKIGVLGCEHEYHADCLKKWLLVKNVCPICKSEA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0355 553 MobiDBLite consensus disorder prediction 312 335 - -
Lal20g0355 553 ProSiteProfiles Zinc finger RING-type profile. 509 550 IPR001841 -
Lal20g0355 553 Pfam Ring finger domain 507 550 IPR001841 -
Lal20g0355 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 553 IPR013083 -
Lal20g0355 553 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 130 553 - -
Lal20g0355 553 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 130 553 IPR045191 GO:0061630
Lal20g0355 553 SMART ring_2 509 549 IPR001841 -
Lal20g0355 553 SUPERFAMILY RING/U-box 502 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0355 Lal-Chr20 2853330 2857399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0355 422 553 C3H Transcription Factor Family AT2G15530 45.652 3.35e-33 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0355 20 2853330 2857399 Lal20g0355 20 2853330 2857399 ECH
Lal20g0355 20 2853330 2857399 Lal11g1451 11 17840815 17845129 LSH
Lal20g0355 20 2853330 2857399 Lal1g1630 1 18713975 18718271 LSH
Lal20g0355 20 2853330 2857399 Lal1g0585 1 3749806 3754926 PCT
Lal1g0585 1 3749806 3754926 Lal20g0355 20 2853330 2857399 PCT