Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1630 ATGGATCAGATGACGGATTCGGAAATGGATCAACAAAATCAAGGATATTTACGTTCTGAACCCTGTATCGTTTTGAGAGGCTCCACAAGTACCTCACAGCCGAATATCCGCACAATGGTGGCAGCTTCAAGGAACACAACTAATGTTGATTCTTACTATTTACACGATGCTTATGACAATACTAGGTTGTATGGGTTGGCACAATACAATGGCGTTCAGCATCAACATAATCTTAACATGGCTGGTGCAACTGCAGCCAACATATATTATTCTGGCATGAATCCTTCTTCTAGTAGTGGTGTATTTACTCCTTTGCCTCTAAATCACCGAGCCTCTGATCAGTTGCCAGGTTCAAACACATTTGCAGTACCCGGAAGTTCTTCAGATAATTTTGGAAGAAGCAGCGGCTTCATGGACGATGTCAGAGGTCCGTACAAAAGGAAAATCGCTGAAGGGATCAGAGGAAATCACCAGTATTTTAATGCTTCAGCTAGTTCTTCTATTGCTCCCCCGAATGCAAGACACGCTGATGGGGTCGACATGATGGATACTGCATCATTTTCCTTGCACATGCCTTCACTTGTGGAGGTAGGACCACATGGTAGTGCATGGAACAGGTCAGGTGAGTCTATTATGGTGCATGACCACAACCATTTGATTTGCGGAAACTATTTAGGTCAGCACTTTCCGCCAGCTCCTCCTCCATGGTTTGACCAGCAGTTGAACAATGATGGCCATACTACAGCCTGGAATCAGCATCTTCCAATGCCTTATATGCAAGCACCAAATGTTAATGGAAGTTCATTAGAGAATGCAAGTATGGGTCTGCAGAGATATCACGACACAGCCAGCAACAGAAATGGCCTCAGGTTTCCTCATCCCCCTCCTGCGAACCACCCACATCATAATTATCATCATCCAGCACTACCTATGCAAGGTGTAAGAGGTCACAATATCGGCTTTCACCCTCCTGTAACTGCAGCTTCATTTAGAGTTCCTACAAATCCTTCACGAAATACCGTGATCCCCACACAAGCTGGTTATGAGATGGTTCCTAGGCATTTTGGCCCTGTGCTGCCAGAAGGCCTACGGATATACCGACCTCATAGAGCAATCGTGCCCGATGCAACTCTCAGACATAGAAATCTTGCCCCCATGGGATTTCTTCAAGTGGATGATGTTGCGTTAATTGATGAAGTGGGAAATCCGGATCTTCTTGCATTGGGTGATCGGATTGGCAAAGTAAGCACCGGCTTATCAGAAGAAACAATTACAGCTCAATTGAAAATCAAGACTTATGTAACCCCCGCTGTTGTTATTAATCTAGAGGAGCCAGCTTCTGAAGATCAGGAATCCGATTCTTGTATAATATGTCAGGATGAATACAAGGACCAACAGAATATTGGAATTCTTCCATGTGATCATGAATATCATGCAGATTGCTTAAAGAAATGGTTGCTTGTCAAAAATGTTTGCCCAATATGCAAATCAGAAGCCTTGTGA 1503 0.4398 MDQMTDSEMDQQNQGYLRSEPCIVLRGSTSTSQPNIRTMVAASRNTTNVDSYYLHDAYDNTRLYGLAQYNGVQHQHNLNMAGATAANIYYSGMNPSSSSGVFTPLPLNHRASDQLPGSNTFAVPGSSSDNFGRSSGFMDDVRGPYKRKIAEGIRGNHQYFNASASSSIAPPNARHADGVDMMDTASFSLHMPSLVEVGPHGSAWNRSGESIMVHDHNHLICGNYLGQHFPPAPPPWFDQQLNNDGHTTAWNQHLPMPYMQAPNVNGSSLENASMGLQRYHDTASNRNGLRFPHPPPANHPHHNYHHPALPMQGVRGHNIGFHPPVTAASFRVPTNPSRNTVIPTQAGYEMVPRHFGPVLPEGLRIYRPHRAIVPDATLRHRNLAPMGFLQVDDVALIDEVGNPDLLALGDRIGKVSTGLSEETITAQLKIKTYVTPAVVINLEEPASEDQESDSCIICQDEYKDQQNIGILPCDHEYHADCLKKWLLVKNVCPICKSEAL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1630 500 MobiDBLite consensus disorder prediction 284 309 - -
Lal1g1630 500 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 130 500 IPR045191 GO:0061630
Lal1g1630 500 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 130 500 - -
Lal1g1630 500 CDD RING-H2_PA-TM-RING 455 496 - -
Lal1g1630 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 500 IPR013083 -
Lal1g1630 500 SMART ring_2 455 495 IPR001841 -
Lal1g1630 500 ProSiteProfiles Zinc finger RING-type profile. 455 496 IPR001841 -
Lal1g1630 500 Pfam Ring finger domain 453 496 IPR001841 -
Lal1g1630 500 SUPERFAMILY RING/U-box 449 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1630 Lal-Chr1 18713975 18718271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1630 397 500 C3H Transcription Factor Family AT2G15530 46.226 4.48e-26 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1630 1 18713975 18718271 Lal1g1630 1 18713975 18718271 ECH
Lal20g0355 20 2853330 2857399 Lal1g1630 1 18713975 18718271 LSH
Lal11g1451 11 17840815 17845129 Lal1g1630 1 18713975 18718271 LSH
Lal1g1630 1 18713975 18718271 Lal1g0585 1 3749806 3754926 PCT
Lal1g0585 1 3749806 3754926 Lal1g1630 1 18713975 18718271 PCT