Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1620 ATGTCGCATTTGGAAAAAGGGTTGAATGGTTCCGTAACGAATCGTTTTCGTGACTCAGTGAGCTGCGGCGAGTTCAATAAACCGGATTTTCGTGAACTTGATCTGGGTTCACCCGTTTCAACGTTGCGGACCCGTGGAATTGGGTTTGGACCCGTTGCAAGTAGTAGCTCAAGTTCTTCTGGATCCTTCTCTGGAGGAAGAACTGAGAAAAATTTGGTTCCTAAAAGATTGGAATCTAAATCCACTATTAATAATGGGAACTACTCCGGTGAATTTTCCGGTGAGAATATTCCGACTAATGTGCGTGGCTGCAGCGGTTCTAAGCCGGGTCATGCAAGATCCGATTCGGGAACCGCTGCGCCGTTAATTTATTCCGGTCAGTCTAGTCAGAGTGTGAATTCTCCGGTGTTGAATGTGCTTCCCACCGGAAACATATGCCCCTCGCGGCGGATCGTGAAGACTGGCATGGCCGCGAATCGGGGGTCAAGGAGTGATGTATTGGGCACTGGTACCGGGAATTATGGCCATGGAAGCATAATGCGGGGTGGGAAAGAGGTTTCGGGTTCGGGTTCGGAGAATGTGAAGGGTGTAGGGAGTGAGGCTGTGAAGAGAGGGGTGCAGAGTGTGGATCCGGAGGAGTTGAAGAGAGTAGGGAATGAGCTTTATAAGAAGGGACATTTTGTTGAAGCGTTAAGATTGTATGACAAGGCTATTGCCTTGTTGCCTAAGAATGCCGCTTACCGGAGCAACCGGGCAGCGGCTTTAACGAGTTTAGGGAGGTTGGTTGAGGCATTGAGCGAGTGTGAGGAGGCTGTGATGTTGGATCCGAAGTATGGTAAAGCTCATCACCGATTGGCAACTCTTTTCCTCAGGCTAGGACAAGTTGAGAATGCCCGGAAGCATTTATGTCATCTCGGGCTGCAATTGGATCCGTCTGACATGCAGAAGTTGCAAATCGTGGAAAAGCATATCAGCAAATGCGCAGACGTAAGAAGGATAGGAGATTGGAGAAGTGTTTTAAGGGAAGTTGATGCTGCTATTGCTGCCGGAGCTGACTCTTCTCCTCAGCTCTTTATGTGTAGAGCTGAAGCTCTTTTGAAGCTCCAACAAATTGACGATGCAGAATCGATTTTGTCGCATCTTCCCAAATCAGAACGGCAGACTAATTCCTCTTCACAAGCAAGATTTTTCGGAATGCTTTCTGAAGCCTATTCCTACTTTATCAAAGCTCAGATTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTTACAGCAGCAGAGAAAGCCAGTCAGATTGATTCCCGAAATGTTGAAGTTGCTGTTTTGCTCAACAATGTAAGGATGGTTGCAAGAGCTCGAGTGCGTGGCAATGATCTTTTTAAATCCGAAAGGTTCACCGAAGCTTGCTCGGCATATGGCGAAGGTTTGAAGCTGGACCCTTCAAATTCCGTTTTATATTGCAATAGAGCAGCTTGTTGGTTTAAACTTGGACAATGGGAAAGATCAATTGAAGACTCCAATCAAGCTTTACTTATCCAACCAAATTACACGAAAGCTCTTCTTCGAAGGGCTGCTTCAAACAGCAAGCTGGATAAGTGGGAAGAAGCTGTCAAAGATTATGAGGTCTTGTGGAGAGACCTTCCAAATGACAATGAAGTTGCTGAAGCTCTTTTTCATGCACAAGTTGCACTGAAGAAATCGCGTGGGGAAGAAGTACATAATTTGAAATTTAGCGGTGAAGTGGAAGAAGTTTCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCGGGTGTTTCTGTTGTCCATTTTAAAATTGCATCAAATTTGCAATGCAAGCAAATATCGCCATTTGTGGATACACTATGTGGTCACTATCCATCTATTAATTTCCTCAAGGTCGATATTCAAGAATGTCCAACAATTGCCACTTCTGAGAATGTTAGGATTGTGCCAACCTTCAAGATATACAAAAGCGGATGTCGAGTGAAGGAAATCGTATGCCCAAGTCGTGATATGTTGGAACACTCCGTGAGGCATTACTGCTAA 2049 0.4544 MSHLEKGLNGSVTNRFRDSVSCGEFNKPDFRELDLGSPVSTLRTRGIGFGPVASSSSSSSGSFSGGRTEKNLVPKRLESKSTINNGNYSGEFSGENIPTNVRGCSGSKPGHARSDSGTAAPLIYSGQSSQSVNSPVLNVLPTGNICPSRRIVKTGMAANRGSRSDVLGTGTGNYGHGSIMRGGKEVSGSGSENVKGVGSEAVKRGVQSVDPEELKRVGNELYKKGHFVEALRLYDKAIALLPKNAAYRSNRAAALTSLGRLVEALSECEEAVMLDPKYGKAHHRLATLFLRLGQVENARKHLCHLGLQLDPSDMQKLQIVEKHISKCADVRRIGDWRSVLREVDAAIAAGADSSPQLFMCRAEALLKLQQIDDAESILSHLPKSERQTNSSSQARFFGMLSEAYSYFIKAQIEMALGRFENAVTAAEKASQIDSRNVEVAVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLKLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALLIQPNYTKALLRRAASNSKLDKWEEAVKDYEVLWRDLPNDNEVAEALFHAQVALKKSRGEEVHNLKFSGEVEEVSGLEQFRAAISLPGVSVVHFKIASNLQCKQISPFVDTLCGHYPSINFLKVDIQECPTIATSENVRIVPTFKIYKSGCRVKEIVCPSRDMLEHSVRHYC 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1620 682 SUPERFAMILY TPR-like 211 438 IPR011990 GO:0005515
Lal1g1620 682 CDD TRX_family 588 675 - -
Lal1g1620 682 MobiDBLite consensus disorder prediction 50 67 - -
Lal1g1620 682 SUPERFAMILY Thioredoxin-like 486 680 IPR036249 -
Lal1g1620 682 Gene3D Tetratricopeptide repeat domain 209 569 IPR011990 GO:0005515
Lal1g1620 682 Pfam Thioredoxin 591 673 IPR013766 -
Lal1g1620 682 MobiDBLite consensus disorder prediction 48 131 - -
Lal1g1620 682 ProSiteProfiles TPR repeat profile. 211 244 IPR019734 GO:0005515
Lal1g1620 682 Pfam Tetratricopeptide repeat 212 244 IPR013105 -
Lal1g1620 682 MobiDBLite consensus disorder prediction 183 204 - -
Lal1g1620 682 SMART tpr_5 211 244 IPR019734 GO:0005515
Lal1g1620 682 SMART tpr_5 483 516 IPR019734 GO:0005515
Lal1g1620 682 SMART tpr_5 279 313 IPR019734 GO:0005515
Lal1g1620 682 SMART tpr_5 517 550 IPR019734 GO:0005515
Lal1g1620 682 SMART tpr_5 449 482 IPR019734 GO:0005515
Lal1g1620 682 SMART tpr_5 245 278 IPR019734 GO:0005515
Lal1g1620 682 SMART tpr_5 403 436 IPR019734 GO:0005515
Lal1g1620 682 Pfam Tetratricopeptide repeat 404 434 IPR019734 GO:0005515
Lal1g1620 682 MobiDBLite consensus disorder prediction 77 103 - -
Lal1g1620 682 Gene3D Glutaredoxin 574 682 - -
Lal1g1620 682 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 11 681 - -
Lal1g1620 682 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 11 681 IPR044534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1620 Lal-Chr1 18612298 18616289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1620 448 593 U-box Gene Family AT3G07370 27.322 4.12e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1620 1 18612298 18616289 Lal1g1620 1 18612298 18616289 ECH
Lal20g0371 20 2977423 2982496 Lal1g1620 1 18612298 18616289 LSH
Lal11g1461 11 17911908 17915954 Lal1g1620 1 18612298 18616289 LSH
Lal1g1620 1 18612298 18616289 Lal1g0598 1 3831347 3835015 PCT
Lal1g1620 1 18612298 18616289 Lal9g0546 9 3691734 3695475 PCT