Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0585 ATGAATCAAACTACTGATACAGCGATGGATCAACAAAGGAGTGAATATTTTCAGTCTGAACCTTGTATCCCTTCCCGAGGCACCAACATCTCTTCGTCTAATATTCGCACAGTGGTGACAACTTCAGGGAACACAACTAATCTTGATTCCCATTATGTACCAGATGCTCATGACAATGTAATGATGAATAGGTTGGCACAAATTACACAATTCGCTAGTGTTCAGAATCAACACAATCGTGACATGGATGTTCCAGCTGCTCCCCACTTATTTTACTCTGGAGTGAATCCTTCATCTATTACTAGTGCATTGCCTCCGCCTCTAAACCACACTGTGTCTGATCAGTTACATGGTTCTAGCACATCTGCAATATCTGGAGCATATAAAAGGAAAAATGCTGAAAGGAATAGAGGAAATTATCAGCATTCCAATGCCTCTTCTAGTTCTTCAGCTGCTCCGCCCAATGCATTATACACTGGCGGGGCTGGTATGATGGACATTGCATCGTTTTCAATGGCTCAGCATAGAGGAAATGGCATCCCTTCACTTGTGGAAGTTGGACCACATGGTAGTTCATGGAGCGGATCGGGCGAGTCTATTATGGCGCCTGACCATAACCGTTTGATTCGAGGAAACTATTTAGGACCACATTTTCAGCCAGCTGCTGCTCCCTGGCCGGAGCAGCCATTGAACTATAATATTAATGATGGTCATGCTGCAGCCTGGAATCAGTCTCTCCCGATGCCTTATTTACAAGTTCGGGATGTTAATGAAAGTTCATTAGAGGATGCAAGTATGGGTCTGCATATGTATCATGATACAGCTAGCATCAGAGGTGGCTTCAGGTTTCCTCATCCTCCTCATGTCAACGCCCTGCCCCATAACTTTCATCATCCAACACTTCCTATGCAAGGAATGAGAGGTCACTCTATTGGCTTTCACCCTCCCTCAGCTTCATATAGGGTTCCCACAAATCCTTTACACAGTGCTCCAGTCCCGGCACAAAATGATTTTGAGATGGGTGCTAGGCATCTTCGCGCTGCACCACCTGCAGGTCTACGCAGACACCGGCCTCAAAGAGGAGTCATGCCCAATGCAACCCTAGGACATCAAAATCTTTCTCCTATGCACTTCTTCCAAGTTGATGAACTTCTTGCATTGAGTGAGCGGATTGGAAATGTAAGCACAGGTTTATCTGATGAAATGATTACAACTCAAATGAAGACAAAAACTTATTCAGTACCTGCTACTGCTATTAATTTGGAGGAAGTGGCTTCTGAGGAACAGGAAACTGATTCTTGCATAATATGCATGAATGAATATGAAAGGCAAGAGAAGATCGGAATTCTACAATGCGGGCACGAGTGTCACGCAGATTGTTTAAGGAAATGGTTGCTTGTGAAAAATGTCTGCCCTATATGCAAATCAGAAGGATTGATCGTGGAGTGA 1449 0.4417 MNQTTDTAMDQQRSEYFQSEPCIPSRGTNISSSNIRTVVTTSGNTTNLDSHYVPDAHDNVMMNRLAQITQFASVQNQHNRDMDVPAAPHLFYSGVNPSSITSALPPPLNHTVSDQLHGSSTSAISGAYKRKNAERNRGNYQHSNASSSSSAAPPNALYTGGAGMMDIASFSMAQHRGNGIPSLVEVGPHGSSWSGSGESIMAPDHNRLIRGNYLGPHFQPAAAPWPEQPLNYNINDGHAAAWNQSLPMPYLQVRDVNESSLEDASMGLHMYHDTASIRGGFRFPHPPHVNALPHNFHHPTLPMQGMRGHSIGFHPPSASYRVPTNPLHSAPVPAQNDFEMGARHLRAAPPAGLRRHRPQRGVMPNATLGHQNLSPMHFFQVDELLALSERIGNVSTGLSDEMITTQMKTKTYSVPATAINLEEVASEEQETDSCIICMNEYERQEKIGILQCGHECHADCLRKWLLVKNVCPICKSEGLIVE 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0585 482 Pfam Ring finger domain 432 475 IPR001841 -
Lal1g0585 482 MobiDBLite consensus disorder prediction 1 30 - -
Lal1g0585 482 ProSiteProfiles Zinc finger RING-type profile. 434 475 IPR001841 -
Lal1g0585 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 478 IPR013083 -
Lal1g0585 482 SUPERFAMILY RING/U-box 428 477 - -
Lal1g0585 482 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 382 479 - -
Lal1g0585 482 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 126 383 - -
Lal1g0585 482 SMART ring_2 434 474 IPR001841 -
Lal1g0585 482 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 126 383 IPR045191 GO:0061630
Lal1g0585 482 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 382 479 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0585 Lal-Chr1 3749806 3754926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0585 382 479 C3H Transcription Factor Family AT2G15530 47.475 1.51e-24 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0585 1 3749806 3754926 Lal1g0585 1 3749806 3754926 ECH
Lal20g0355 20 2853330 2857399 Lal1g0585 1 3749806 3754926 PCT
Lal11g1451 11 17840815 17845129 Lal1g0585 1 3749806 3754926 PCT
Lal1g1630 1 18713975 18718271 Lal1g0585 1 3749806 3754926 PCT
Lal1g0585 1 3749806 3754926 Lal20g0355 20 2853330 2857399 PCT
Lal1g0585 1 3749806 3754926 Lal11g1451 11 17840815 17845129 PCT
Lal1g0585 1 3749806 3754926 Lal1g1630 1 18713975 18718271 PCT