Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0523 ATGCAGAAAGTTAGACCCAGTTTTCTTTTTTCTTCATCCATTGTTCTTCATTTCTTCATAGTTATTTTTTCTGTTTTTTTTCTCAGTGTTTATTCACAAGATGATGCAGCTATTATGAATCTTCTGAAAAAATCGATTAATGGAAGTAGTAATCTTCACTGGAGTGATCCAGATTTTTGTAAATGGAACAATATTCGGTGTAATTCAGGAAGAGTTACTGCAATTCAAATTTCTTATTCAAATATTCAAGGTTCTTTGCCTAAAGAATTGGTTAACCTTACAGAATTGCAGATATTTGAATGTAGCAACAATGCTATCATGGGTCCTGTTCCTTACATGCCAATGTCTCTTCAGAAGTTTAGTATCAATAACAACAATTTCAATTCAATGCCTAATGATTTCTTTAAAGGTATGACAAATTTGGCTGAGTTGAGAATTGATTATAACCCTTTTAGTCAATGGAATATTCCTGATAGCCTTCAAGATTGTATTTCCCTTAGGAGTTTTTCGGGTATGAATGCGAGTTTTGTTGGGAGAATTCCGAGTTTTTTTGGAAAAGATGGTCCTTTCCAAGGGCTGGCTTATCTAGCTTTGGCTTTTAATTATCTAGAGGGCGAGTTGCCGAGCAGTTTTTCGGGGAGTTCTATAGAGAGGCTTTTGGTCAATGGGCAACAAAGTATGAATAAACTTAATGGTACCATTGATGTGTTACAGAATATGACATTTTTGAAACAAATTTGGGTACGTGGTAATTCATTTACTGGTCCTATACCGGACTTATCGAACCATGATCAATTATATGATGTGAGTTTGAGGGATAACAAATTGACTGGTGTTGTTCCACCCAGTCTTATTAATCTTCCTTCTCTCACTGTTGTGAATTTAACCAATAACTATCTTCAAGGTCCACTTCCCAAGTTCAGAAAAGAGGTTGGAGTTGATAATGATGTTGTGAGAGGGGGTAATAGGTTTTGCACTAATCAAGTTGATCAGCCATGTAGTCCTCTTGTGAATGCTTTACTTTCTGTCGTTGAGCCTTTAGGTTATCCTTTAACGCTTGCTGATTCGTGGAAGGGTAATGATCCTTGTGCAAGAGGTAACAATGAATGGTTAGGGATTTTTTGTTCTGGATCTCCTACTAACATTACAATGATCAATTTCCAGAATAGGGGTTTATCCGGTACTATTTCTCCCAAGTTTGCAAGCTTTATGTACGTGACCAGGTTGCTTCTTGGTAACAATAATCTCACTGGTACCATACCAAATGAGCTTGCTAGTATGCCTGCTCTGAAAGAGCTAGATGTTTCGAATAATCAGTTATATGGTCAGATACCATCGTTCCGTCAAGAGGTGGTTGTTAAAACCAGTGGGAATCCTAATCTTGGAAAGATAATAACACCTCCTCCTGTCCCAAATCCTACTCCAGATTCTGGAAATAATCCTGTCCCAAGTCCTGGAATTCACCCTGCTCCAGATTCTGTAAATAATCCTGCTCCAGATTCTGGAAATAATCCTGGAGCTGAAGGCAATAAACTTAATATTGGAGTCATTGTTGGCATTGTGGTGGGGGTTGTCTTTTTAATTGGTATAGGGGTTATGCTATGTATTAAGTTTTGTAGAAAACATAAGCAAGCTAGCAAAGTTGAAAATCCAAATACCATAGTGGTACATCCTTATCATTCTGGAGATGGAAAAGCTTTGAAGATGAGTGCATTTAGTTCAGGAAGTAGTGTTCGCAATGTGGAATCTGGTAATATGGTAATTTCAGTTCAAGTTTTGAGAGAAGTTACAGACAATTTTAGTGAAAAAAACATTTTGGGGAAAGGAGGTTTTGGCACTGTATACAAAGGAGAATTGCATGATGGAACAATGATTGCAGTGAAAAGGATGGAATCCGGAATCGTGGGAGAGGGTGAGAAGGGGCTGACTGAGTTCAAGTCTGAAATTGCGGTACTTACTAAGGTTCGACACAGGCATTTGGTTGCACTCCTGGGACATTGCTTGGATGGAAATGAGAAGCTCCTTGTGTATGAGTACATGCCTCAGGGGACACTTAGTGAGCATTTGTTCGACCGGAAAGGAGATAACGGGTCAAAACCACTAGACTGGAAGAGAAGGCTTATTATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATAGTTTGGCCCAACAAATATTTATCCACAGGGATCTAAAACCATCAAACATCTTACTCGGGGATGACATGCGAGCTAAAGTATCAGACTTTGGACTCGTTCGACTTGCTCCAGAAGGACAAGCCTCCTTTGAGACTAGACTTGCTGGAACTTTTGGATATCTGGCACCAGAGTATGCAGTCACTGGACGCGTTACAACGAAGGTTGATGTATATAGCTATGGTGTGATTCTGATGGAGATGATAACGGGAAGGAAATCAATCGATAATAGCCAACCAGAAGAAAACATCCACCTTGTTACATGGTTCCGTAGGATGATACTGAACAAAGACTCTTTCGAAAAGATCATAGACCCAGCAATTGATGTGGATGAGGAAGCCTTAGACAGTTTTAGAACTGTTGCAGAGCTAGCTGGGCACTGCTGTGCGAGGGAGCCATATCAGCGTCCCGATATGAGCCATGTAGTGAATGTTCTAGCACCTCTTGTTGAGATATGGAAGCCTACTGAATCAAGTCTTGATGAGATATATGGGATTGACCTGGATATGAGCTTGCCACAAGCACTTAATAGGTGGCAGGCTTTGGAAGGAAGGAGCACCTTCGGTGTATCATCTTCGATGTATAGTGATCATACGCATTCAAGTTTACCGGCCGGGGCTGATGGATTTGGAGATTCCATTATTGTTGGAAGATAA 2856 0.3985 MQKVRPSFLFSSSIVLHFFIVIFSVFFLSVYSQDDAAIMNLLKKSINGSSNLHWSDPDFCKWNNIRCNSGRVTAIQISYSNIQGSLPKELVNLTELQIFECSNNAIMGPVPYMPMSLQKFSINNNNFNSMPNDFFKGMTNLAELRIDYNPFSQWNIPDSLQDCISLRSFSGMNASFVGRIPSFFGKDGPFQGLAYLALAFNYLEGELPSSFSGSSIERLLVNGQQSMNKLNGTIDVLQNMTFLKQIWVRGNSFTGPIPDLSNHDQLYDVSLRDNKLTGVVPPSLINLPSLTVVNLTNNYLQGPLPKFRKEVGVDNDVVRGGNRFCTNQVDQPCSPLVNALLSVVEPLGYPLTLADSWKGNDPCARGNNEWLGIFCSGSPTNITMINFQNRGLSGTISPKFASFMYVTRLLLGNNNLTGTIPNELASMPALKELDVSNNQLYGQIPSFRQEVVVKTSGNPNLGKIITPPPVPNPTPDSGNNPVPSPGIHPAPDSVNNPAPDSGNNPGAEGNKLNIGVIVGIVVGVVFLIGIGVMLCIKFCRKHKQASKVENPNTIVVHPYHSGDGKALKMSAFSSGSSVRNVESGNMVISVQVLREVTDNFSEKNILGKGGFGTVYKGELHDGTMIAVKRMESGIVGEGEKGLTEFKSEIAVLTKVRHRHLVALLGHCLDGNEKLLVYEYMPQGTLSEHLFDRKGDNGSKPLDWKRRLIIALDVARGVEYLHSLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRKSIDNSQPEENIHLVTWFRRMILNKDSFEKIIDPAIDVDEEALDSFRTVAELAGHCCAREPYQRPDMSHVVNVLAPLVEIWKPTESSLDEIYGIDLDMSLPQALNRWQALEGRSTFGVSSSMYSDHTHSSLPAGADGFGDSIIVGR 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0523 951 ProSitePatterns Protein kinases ATP-binding region signature. 606 628 IPR017441 GO:0005524
Lal18g0523 951 Pfam Protein kinase domain 601 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0523 951 CDD STKc_IRAK 606 882 - -
Lal18g0523 951 SUPERFAMILY L domain-like 37 306 - -
Lal18g0523 951 Gene3D Ribonuclease Inhibitor 336 465 IPR032675 -
Lal18g0523 951 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 12 947 - -
Lal18g0523 951 Gene3D Phosphorylase Kinase; domain 1 563 679 - -
Lal18g0523 951 ProSiteProfiles Protein kinase domain profile. 600 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0523 951 Pfam Leucine rich repeat N-terminal domain 338 376 IPR013210 -
Lal18g0523 951 Pfam Leucine rich repeat N-terminal domain 33 68 IPR013210 -
Lal18g0523 951 MobiDBLite consensus disorder prediction 458 506 - -
Lal18g0523 951 SUPERFAMILY L domain-like 339 447 - -
Lal18g0523 951 MobiDBLite consensus disorder prediction 464 492 - -
Lal18g0523 951 SUPERFAMILY Protein kinase-like (PK-like) 579 879 IPR011009 -
Lal18g0523 951 SMART serkin_6 600 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0523 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 728 740 IPR008271 GO:0004672|GO:0006468
Lal18g0523 951 PANTHER OSJNBA0070M12.3 PROTEIN 12 947 - -
Lal18g0523 951 Gene3D Transferase(Phosphotransferase) domain 1 680 894 - -
Lal18g0523 951 Gene3D Ribonuclease Inhibitor 32 331 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0523 Lal-Chr18 4320145 4324084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0523 67 885 Receptor kinase-like Gene Family AT5G07280 31.271 1.02e-88 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Lal18g0523 Pkinase 7.4e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0523 18 4320145 4324084 Lal18g0523 18 4320145 4324084 ECH
Lal22g0970 22 8107177 8111172 Lal18g0523 18 4320145 4324084 LSH