Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0522 ATGGGTCTTAGTTTGAAGATGCAAAGCCACAATCCTGTGGCTTTGAGGTTGCATGATCAAATAGGGTCTAAAAGAAAGTACACTTTCATTCAGGCACATAGAGCTTGGCTCCCAAAGTTTTTGGTTATGTGGATCCTTCTAATGGCTATAATAAGTTGGTGGATCTATAGTAAAATGGATGATGACACCAAAATCAGAAGGAAAGAGGTTTTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGTTGCAAGATCAGTTTAGTGTTAGTGTTAACCATGTTCATGCTCTTGCCATCCTTGTTTCAACCTTCCATTATTACAGATACCCTTCTGCAATTGACCAGGAAACCTTTGCTGAGTATACAGCTAGGACAGCATTTGAAAGGCCATTACTGAGTGGTGTGGCCTATGCACAAAGAGTTGTTGATTCAGAGAGAGAAAGATTTGAGAATCAACATGGATGGGTCATAAAGACAATGGAAAGAGTGTCTTCATTGGTTAGAGATGAGTATGCACCGGTTATATTTGTGCAAGAAACTGTCTCATACCTCGAATCTATTGATATGATGTCCGGGGAGGAAGACCGAGAAAACATTTTGAGGGCAAGGGCCACTGGGAAAGCAGTTCTGACTAGCCCTTTCAGGCTGTTGGGTTCTCATCATCTTGGTGTGGTATTAACATTCCCTGTTTACAAATATAAGCTCCCTCCAAAGCTAACAGTCGAAGAACGCGTTGAAGCAACTGCAGGATATGTTGGAGGATCTTTTGATGTTGAATCCCTTGTGGAAAATTTACTTGGGCAACTTGCTGGTCACCAAGCAATTTTGGTGAATGTATATGATATCACCAACTACACCAATCCGTTAATCATGTACGGTAACCTGTACGAAGAAGGCGATATGTCTCTTGCCCATGAAAGCGCCCTAGATTTTGGAGATCCATTCAGGAAACATCAGATGATATGCAGGTATCATCAGAAGGCGCCGATAAATTGGACAGCGCTTACCACGGCATTCCTATTCTTTGTGATTCTTTTATTAGTCGGCTACATTTTATACGGTGCTGGAAATCATATTATCAAAGTTGAGGATGATTTCCATGAAATGCAGGAACTAAAAGTCCGAGCAGAAGCAGCTGATGTTGCCAAGTCCCAGTTTCTCGCTACCGTATCTCATGAAATTAGAACACCAATGAATGGCATTTTAGGAATGCTTGCTCTGCTTCTAGATACAGAGTTGAGTTCAACCCAGAGAGATTATGGTCAGACTGCTCAAGCATGTGGAAAGGCACTGATAACTTTGATAAATGAGGTGCTCGACCGAGCTAAAATTGAAGCTGGCAAGTTAGAGTTGGAGGCAGTTCCATTCGACCTTCGTTCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCTAGGCACAAAGGTTTAGAGTTTCATATTTCTGTTTCTCTTTCTCTAATTGATGAACTTACATTGTTCTTTATGTCTGTTTCGCCTTTCGGGGTTCTTATATCACTGGATGCTGATGCTCCTGATCTGGCAGTGTTTGTCTCAGATGAAGTTCCTGATATCGTTACGGGAGATCCTGGGAGATTCAGACAAATAATAACAAATCTTGTTGGCAACTCTGTTAAAGTAGGTGGAATTTCCAAATTTACTGAACAAGGACATATATTTGTTAAAGTCCACCTTGCAGAAAGTAGGAAGTCCACAATGCATGGAAAACATGAGACTTTTGTAAATGGAGGATCTGATGAAGTTTTTCATATTTCTGGTGGTTATCATTTTAAAACCTTAAGTGGATGCGAAGCAGCGGATGAACAGAACACCTGGGATAATTTTAAGCATCTACTTGCTGATGAATCCTCAAGTAAAATAGTGGCCTCGTGTGAATTTTCCGAGCAAGTCACCTTGAGGGTCTGTGTGGAGGACACTGGAATTGGAATTCCTTTCTCAGCCCAGGATACGATATTTTTGCCTTTTGTGCAGGCAGACAGCTCGACCTCGAGAAATTATGGTGGTACTGGTATTGGTTTAAGTATTAGTAAATGTCTGGTGGAATTAATGGGAGGTCAGATAAATTTCATAAGCCAACCGCAGGTTGGCAGCACATTTTCGATTACTGCGGTTTTCGGAACATTTAAGAAAAAAATGGTTAATGACACAAAGAAAGTTAACTTGGAAGAGCTTCCTTCAAGTCTTAGAGGGCTTAAAGCCATAGTGGTTGAAGAACTTCCTTCAAGTTTTAGAGGGCTTAAAGTCATAGTGGTTGATGGAAAACCTGTTAGAGCTGCTGTGACCAGATACCATTTGAAGAGACTAGGGATAGTAGTTAAAGTTGCCAATAGCATCAGTAAGGCAATTACTTTATGTAGGAAAAATGGTTCTATTACATCAGAATTTTTCCTGCCTGATATTATTTTGGTTGAGAAGGATTCATGGATTTCTGGAGTGGATGGAAGTTTCGATGTAAGGAAATTAGATCGGAAACAGAACGGGCATATGTTTAAGATGCCTAAATTGATCCTTCTGGCAACCAACATGAGTAATACTGAATTCGATAAAGCGAAAGCTTCAGGTTTTACTGATACAGTGATCATGAAGCCTCTGAGAGCTAGTATGATCGCTGCATGTCTTCAGCAAGTTCTCGGCGTAGGGAAGAAGAGACAGCTAGGGAAAGACATGCCTGATGGTTCTACTTTTCTACAAAGCCTTCTCTATGGAAAGAAAATATTGGTAGTCGATGACAACATGGTGAACCGGAGGGTTGCTGCAGGCGCATTAAAAAAGTTTGGAGCCGATGTGAAGTGTGCTGAAAGTGGCAAAGCTGCACTTGAAATCCTTCAGTTACCTCACAATTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGATGGATTCGAAGCAACGAGTCGAATTCGGATAATGGAAAGCGCGGCGAATGAGCAGATGAATGGTAAAGAAAATGACAGAACAAATAAGTGGCATATACCAATATTAGCAATGACAGCTGATGTTATCCATGCAACATCAGATAAGTGTTTGAAATGTGGCATGGATGGATATGTCTCTAAGCCATTTGAGGAAGAAAATCTCTATAAGGAAGTTGCAAAGTTTTTCAAATCCAAGTCCATCTCAAACTCATCATAG 3159 0.408 MGLSLKMQSHNPVALRLHDQIGSKRKYTFIQAHRAWLPKFLVMWILLMAIISWWIYSKMDDDTKIRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRYPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVDSERERFENQHGWVIKTMERVSSLVRDEYAPVIFVQETVSYLESIDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKYKLPPKLTVEERVEATAGYVGGSFDVESLVENLLGQLAGHQAILVNVYDITNYTNPLIMYGNLYEEGDMSLAHESALDFGDPFRKHQMICRYHQKAPINWTALTTAFLFFVILLLVGYILYGAGNHIIKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYGQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLEFHISVSLSLIDELTLFFMSVSPFGVLISLDADAPDLAVFVSDEVPDIVTGDPGRFRQIITNLVGNSVKVGGISKFTEQGHIFVKVHLAESRKSTMHGKHETFVNGGSDEVFHISGGYHFKTLSGCEAADEQNTWDNFKHLLADESSSKIVASCEFSEQVTLRVCVEDTGIGIPFSAQDTIFLPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISQPQVGSTFSITAVFGTFKKKMVNDTKKVNLEELPSSLRGLKAIVVEELPSSFRGLKVIVVDGKPVRAAVTRYHLKRLGIVVKVANSISKAITLCRKNGSITSEFFLPDIILVEKDSWISGVDGSFDVRKLDRKQNGHMFKMPKLILLATNMSNTEFDKAKASGFTDTVIMKPLRASMIAACLQQVLGVGKKRQLGKDMPDGSTFLQSLLYGKKILVVDDNMVNRRVAAGALKKFGADVKCAESGKAALEILQLPHNFDACFMDIQMPEMDGFEATSRIRIMESAANEQMNGKENDRTNKWHIPILAMTADVIHATSDKCLKCGMDGYVSKPFEEENLYKEVAKFFKSKSISNSS 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0522 1052 CDD HATPase_EvgS-ArcB-TorS-like 533 712 - -
Lal18g0522 1052 Pfam His Kinase A (phospho-acceptor) domain 381 446 IPR003661 GO:0000155|GO:0007165
Lal18g0522 1052 SMART REC_2 910 1039 IPR001789 GO:0000160
Lal18g0522 1052 Gene3D - 59 111 - -
Lal18g0522 1052 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
Lal18g0522 1052 PANTHER TWO-COMPONENT HISTIDINE KINASE 513 746 - -
Lal18g0522 1052 PANTHER TWO-COMPONENT HISTIDINE KINASE 22 485 - -
Lal18g0522 1052 PANTHER TWO-COMPONENT HISTIDINE KINASE 744 1047 - -
Lal18g0522 1052 CDD REC_hyHK_CKI1_RcsC-like 912 1039 - -
Lal18g0522 1052 Gene3D - 501 715 IPR036890 -
Lal18g0522 1052 PRINTS Bacterial sensor protein C-terminal signature 639 653 IPR004358 GO:0016310|GO:0016772
Lal18g0522 1052 PRINTS Bacterial sensor protein C-terminal signature 657 667 IPR004358 GO:0016310|GO:0016772
Lal18g0522 1052 PRINTS Bacterial sensor protein C-terminal signature 674 692 IPR004358 GO:0016310|GO:0016772
Lal18g0522 1052 PRINTS Bacterial sensor protein C-terminal signature 698 711 IPR004358 GO:0016310|GO:0016772
Lal18g0522 1052 CDD HisKA 381 442 IPR003661 GO:0000155|GO:0007165
Lal18g0522 1052 Gene3D CHASE domain 112 327 IPR042240 -
Lal18g0522 1052 SMART CHASE_2 108 293 IPR006189 -
Lal18g0522 1052 SUPERFAMILY CheY-like 909 1043 IPR011006 -
Lal18g0522 1052 ProSiteProfiles Response regulatory domain profile. 911 1043 IPR001789 GO:0000160
Lal18g0522 1052 SMART HisKA_10 381 446 IPR003661 GO:0000155|GO:0007165
Lal18g0522 1052 SMART HKATPase_4 528 714 IPR003594 -
Lal18g0522 1052 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 517 709 IPR036890 -
Lal18g0522 1052 Gene3D - 748 887 - -
Lal18g0522 1052 Gene3D - 905 1051 - -
Lal18g0522 1052 PANTHER HISTIDINE KINASE 4 744 1047 - -
Lal18g0522 1052 PANTHER HISTIDINE KINASE 4 22 485 - -
Lal18g0522 1052 PANTHER HISTIDINE KINASE 4 513 746 - -
Lal18g0522 1052 Pfam CHASE domain 111 291 IPR006189 -
Lal18g0522 1052 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 528 711 IPR003594 -
Lal18g0522 1052 Gene3D - 356 444 - -
Lal18g0522 1052 SUPERFAMILY CheY-like 749 885 IPR011006 -
Lal18g0522 1052 Pfam Response regulator receiver domain 912 1039 IPR001789 GO:0000160
Lal18g0522 1052 ProSiteProfiles Response regulatory domain profile. 754 884 IPR001789 GO:0000160
Lal18g0522 1052 ProSiteProfiles Histidine kinase domain profile. 388 714 IPR005467 -
Lal18g0522 1052 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 447 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0522 Lal-Chr18 4306842 4313965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0522 19 1052 Histidine Kinase Gene Family AT2G01830 67.306 0.0 1360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal18g0522 HATPase_c 4.5e-27 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0522 18 4306842 4313965 Lal18g0522 18 4306842 4313965 ECH