Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0990 ATGGAAGTGCTGCTACTGCTTCTTCTCATGTCCTTTTCCATTTTACCACTCTCTGTTTCTTCTGCTGAAGATGCTTTTATTGGTGTCAACATTGGTCCAGATGCCTCAAACATGCCAAGTCCAAAAGATACTGTGGCCCTCCTTAAGGCTCAAAGTATTCAACATATCAGACTCTTCGACGCTAACCAAGCCTTGCTTCTTGCACTAGCCAAGACAGGAATCAGTGTGACTATTTCTATTCCTAATGACCAGTTACTTGCCATTGGTCAGTCCAATGCCACTGCAGCAAATTGGGTTAATAGAAATGTCATAGCTCATGTACCAGCTACCAACATTACTTCCATAGCTGTTGGATCTGATGTCCTAACTACGCTCCCAAATGCAGCACCAGTTCTAGTCTCTGCCTTAAAATTCATTCACTCAGCTCTTGTGGCTGCTAATCTAGATCAGCAAATCAAAGTCTCTACTCCGTACTCTTCTTCTATCATCGTTGGCTCTTTCCCACCCTCCCAGGCAAATTTCAATCGTACTTGGAATCAACAGGTCACGGTTCCTTTGCTTCAATTTTTGCAATCAACAGGTTCATATCTTATGCTCAATGTATATCCATACTATGATTACATGCTGTCATTCGGTTACATCCCACTGGATTATGCTTTATTCCGCCCGCTACCTCCGAATAAGGAAGCTGTTGATTCCAACACTCTCCTACATTATACTAATGTTTTTGATGCTGTTGTTGATGCTGCTTATTTTGCAATGTCTGATTTGAACTTCACCAATATCCCTATTGTGGTGACTGAGACAGGATGGCCTTCCAAAGGTGACTCAACTGAGCCAGATGCAACTGTCGATAACGCTAACACTTACAACAGCAACTTGATCAAACATGTCCTTAATAATACCGGAACGCCTAAACATCCTGGAATCGCAGTCAGTACGTATATTTATGAGCTTTATAACGAAGACTTAAGATCAGGTCCAGAATCTGAGAAGAACTGGGGGCTATTTTATGCTAATGGAGAACCAGTGTATACCTTACACTTGACTGGCGCTGGTACTTTATTCGCAAATGATTCAACAAACCAAACATTTTGTGTCACGAAGAGTAATGATGACCCAAAGATGCTACAAGCAGCACTTGATTGGGCTTGTGGACCCGGGAAGGTGGATTGTTCACCTTTGCTGCAGGGCCAACCATGTTATGAACCAAATAATGTAGTTTCACACGCCGCATATGCTTTCAATGCCTATTATCAGAAGATGGCTAAATCTGCTGGGACTTGTGATTTCAAAGGGGTTGCCACCATAACAACCTCAGACCCAAGTCATGGTTCTTGTATATTCCCGGGAAGCAATGGTAAAAATGGCACCAGAAAAAATGGCACGTCTTTGGCCCCATCTAACTCCTCAAGTTCAGGCTGCTTCTCACAATACTACTACAATGGTGAATCTTTCACAAGCTCAGTGATACTAGTTCTTTTACTTTTTAGTGCACTTGTCATGTAA 1509 0.4235 MEVLLLLLLMSFSILPLSVSSAEDAFIGVNIGPDASNMPSPKDTVALLKAQSIQHIRLFDANQALLLALAKTGISVTISIPNDQLLAIGQSNATAANWVNRNVIAHVPATNITSIAVGSDVLTTLPNAAPVLVSALKFIHSALVAANLDQQIKVSTPYSSSIIVGSFPPSQANFNRTWNQQVTVPLLQFLQSTGSYLMLNVYPYYDYMLSFGYIPLDYALFRPLPPNKEAVDSNTLLHYTNVFDAVVDAAYFAMSDLNFTNIPIVVTETGWPSKGDSTEPDATVDNANTYNSNLIKHVLNNTGTPKHPGIAVSTYIYELYNEDLRSGPESEKNWGLFYANGEPVYTLHLTGAGTLFANDSTNQTFCVTKSNDDPKMLQAALDWACGPGKVDCSPLLQGQPCYEPNNVVSHAAYAFNAYYQKMAKSAGTCDFKGVATITTSDPSHGSCIFPGSNGKNGTRKNGTSLAPSNSSSSGCFSQYYYNGESFTSSVILVLLLFSALVM 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0990 502 Pfam Glycosyl hydrolases family 17 27 348 IPR000490 GO:0004553|GO:0005975
Lal16g0990 502 SMART X8_cls 364 449 IPR012946 -
Lal16g0990 502 Pfam X8 domain 365 436 IPR012946 -
Lal16g0990 502 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 8 492 - -
Lal16g0990 502 Gene3D Glycosidases 26 354 - -
Lal16g0990 502 Gene3D - 358 463 - -
Lal16g0990 502 SUPERFAMILY (Trans)glycosidases 27 348 IPR017853 -
Lal16g0990 502 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 8 492 IPR044965 GO:0004553|GO:0005975
Lal16g0990 502 ProSitePatterns Glycosyl hydrolases family 17 signature. 262 275 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0990 Lal-Chr16 6584337 6592748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0990 23 443 Glycoside Hydrolase AT2G01630 74.109 0.0 657
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0990 16 6584337 6592748 Lal16g0990 16 6584337 6592748 ECH