Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0987 ATGGACGACGTTAAAGACAAAGTAAAGGGTTTCATGAAAAAAGTCAACAACCCTTTTTCCTCTTCATCTTCCTCTCCCAAATTTAAAGGCCAAGGTAGAGTCTTGGGTTCTTCTTCATCATCTTCACCCACCAATTCAATTCCCAATTCAAAATCAGCTTCTCCTTCAACCAATCCCAAACCCACTTCTGCTCCAACTAATCCCAAACCCTTGCCCCAAAAAAACGTCAAATCGGATCAGAATGGGATCCAGAAAGGTGAAAGATCCGATCTTGATCGCAAACCCGGAAATGGGTTTGACCCTTTTGATTCTCTTGTCACTACAGGGAAGAGATCTCAAAATGGGTATTCACTCAACGTTTATGAATGCCCCATTTGTGGAAAATCATTTAGATCTGAAGAAGAGGTTTCTGAACATGTGGATAGTTGTTTGAGTAATCCAATTGAAAGTGACGATGGAAATTATGTTGTCTATGAGAAGAATAATGAAATTGAGTGGAATAATGGTGAATTGGAGGTTTGTGTTGGTACTTACATTTCAGGGAACCCATCTGAGGGATCGGTTGATGTTGTTCTCAAATTGTTGAGGAATATCGTTAGGGAGCCGGATAATGCGAAATTTCGGAGGATCAGGATGAGTAATCCAAAGATAAAAGAGAGTGTTGGTGAGGTTATGGGTGGAGTTGAGTTGCTGAGTTTTGTGGGTTTTGAAATTGGGGATGAGAATGGAGAGACATGGGCAGTGATGGAGGTTCCTAAAGAGGAGCAGATAAAATTGATTAAGAAATCAATCTTGTTACTTGAATCACAACTGGTTCAAGAACCTGCAAAAAAGGAGAATTTGGTGCATGCAGCTTCTACTGATATAGATGCAAAGACCGATGAACCGAAGCAGGTCGACAGACAGGTCTTCTTTTCTGTTCCTGAAAGCGTTGCAGCTAAAATTGAACTACCAGATTCCTTCTATAAGCTTGGAGCTGACGAGGTGAGAAGAGAAGCTGAATTAAGGAGAAAAAAGCTTGAAGAGTCTCAGCTTTTAATCCCTAAATCGCTTAAAGAAAAGCAAGCAAAAGCTGCCAGGAAGAGATACACAAGAACTATTATTAGGATTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTTCTCCTCTTGAACCAACTACTGCTCTTTATGAGTTTGTTAGCTCAGCATTAAAAGAACCAGCTTTGGAATTTGAGCTAATCCATCCTGTACTTATCAAACGACGGGTGATCCCTCATTTTCCGAAATCAGGGGAAAATGCTAAAACAATAGAGGAAGAGGATCTGGTACCTTCAGCTCTAGTTAAGTTCAAGCCCCTGGAAACAGATTCTGTTGTTTTCACTGGTCTCAAAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGTTTAA 1419 0.4017 MDDVKDKVKGFMKKVNNPFSSSSSSPKFKGQGRVLGSSSSSSPTNSIPNSKSASPSTNPKPTSAPTNPKPLPQKNVKSDQNGIQKGERSDLDRKPGNGFDPFDSLVTTGKRSQNGYSLNVYECPICGKSFRSEEEVSEHVDSCLSNPIESDDGNYVVYEKNNEIEWNNGELEVCVGTYISGNPSEGSVDVVLKLLRNIVREPDNAKFRRIRMSNPKIKESVGEVMGGVELLSFVGFEIGDENGETWAVMEVPKEEQIKLIKKSILLLESQLVQEPAKKENLVHAASTDIDAKTDEPKQVDRQVFFSVPESVAAKIELPDSFYKLGADEVRREAELRRKKLEESQLLIPKSLKEKQAKAARKRYTRTIIRIQFPDGVVLQGVFSPLEPTTALYEFVSSALKEPALEFELIHPVLIKRRVIPHFPKSGENAKTIEEEDLVPSALVKFKPLETDSVVFTGLKNELLEISEPLVNV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0987 472 CDD PUB 184 269 - -
Lal16g0987 472 Pfam PUB domain 185 261 IPR018997 -
Lal16g0987 472 MobiDBLite consensus disorder prediction 15 60 - -
Lal16g0987 472 Gene3D - 355 448 - -
Lal16g0987 472 ProSiteProfiles Zinc finger CCHC NOA-type profile. 115 145 IPR034735 GO:0070530
Lal16g0987 472 Gene3D Classic Zinc Finger 117 147 - -
Lal16g0987 472 SUPERFAMILY Ubiquitin-like 327 445 IPR029071 -
Lal16g0987 472 MobiDBLite consensus disorder prediction 1 110 - -
Lal16g0987 472 Gene3D - 180 268 - -
Lal16g0987 472 MobiDBLite consensus disorder prediction 81 97 - -
Lal16g0987 472 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 470 - -
Lal16g0987 472 ProSiteProfiles UBX domain profile. 361 445 IPR001012 GO:0005515
Lal16g0987 472 Pfam UBX domain 362 418 IPR001012 GO:0005515
Lal16g0987 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 139 IPR013087 -
Lal16g0987 472 SUPERFAMILY PUG domain-like 183 268 IPR036339 -
Lal16g0987 472 SMART PGNneu 186 253 - -
Lal16g0987 472 SMART c2hc_5 120 144 IPR006642 GO:0003677|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0987 Lal-Chr16 6568767 6572435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0987 1 393 C2H2 Transcription Factor Family AT2G01650 55.750 8.42e-141 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal16g0987 UBX 2.1e-05 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0987 16 6568767 6572435 Lal16g0987 16 6568767 6572435 ECH
Lal16g0987 16 6568767 6572435 Lal15g0976 15 7703380 7705094 LSH