Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0982 ATGTCGTGGGAAGAAGAGATTGTAATGCGTGACGTCACCAATGCAGGTCTTGTTGTCAGTGATCGCATTGCTCGTGAACTTTCCTCTCATCTTGACCTTGAAGAGTCTCTAGAAGCTTCTAGATACGCCACCCACCCTTATTCCACTAACCCCAGAGAGTGGCCCCCTTCAGTTGAGGTTGCAAATACCTGGGATTTGCCTCCTGTACTCATTGAAAGATACAATGCAGCCGGTGGGGAAGGAACTGCTTTTTGTGGAATATTTCCCGAAATTCGCAGGGCATGGGCGTCTGTAGATAATTCCTTGTTTCTTTGGCGTTTTGATAAGTGGGATGGCCAATGTCCTGAATATAGTGGGGAGGAACAAGCTATTTGTGCTGTTGGTCTTGCAAAATCAAAACCTGGTGTTTTTGTTGAAGCTATCCAATACCTTTTGATTTTAGCGACGCCTGTGGAGTTGACCTTAGTAGGAGTGTGCTGCTCCGGGGGAGCAGATGGCTCAGATCCGTTTGCAGAAGTTTCATTACAGCCATTGCCAGAGTATACAGTACCATCTGATGGGGTTACCATGACTTGTGTAGTATGTACTGACAAGGGCCGTATTTTCCTCGCTGGCCGTGATAGCCACATTTATGAACTTATCTATTCGACTGGTTCTGGGTGGCAAAAGCGGTGCAGAAAAATATGTATCACTGCTGGTTTAGGAAGCGTAATTTCAAGATGGGTTATACCAAATGTATTCAATTTTTCAACCGTTGACCCAATTGTTGAAATGGTTTTTGACAATGAGAGGCAAATATTGTATGCACGGACTGAAGAGATGAAGCTTCAGGCTTATGTTCTTGGATCAAATGGTGATGGCCCATTAAAGAAGGTGGCTGAAGAAAGGAATCTTGTGAATCAGAAGGATGCCCATTACGGAGGTAGGCAGTCGGCAGGACCAAGAGGCTCAAGTCGATCTCCAAAGCCATCTATTGTTTCCATATCACCCGTTTCTTCCCTTGAATCCAAATGGCTACATCTTGTTGCTGTTTTATCTGATGGCAGAAGGATGTACCTATCTACCTCCCCTTCTAGTGGAAGCTTGACTGGGTTCAACATCAACCATCACAAGCCTAGCTGTTTAAAAGTTGTCACAACTAGGCCTGCTCCTCCTTGGGGTGTTAGTGGTGGTCATACCCTTGGAGCCATGGCTCTTGCTGGTAGACCTCAGAATGACGATCTCTCGCTGAAAGTTGAGGCAGCCTATTATTCTGCTGGGACTCTTATCCTTTCTGATGCATCACCTCCAAACATGCCTTCAATACTTGTTTTGAACAGGGATTCAAGCACACACTCATTGCCATCAGGTAATCTAGGCACAAGTACGAGGAGTTCCCGGGCACTACGAGAATCTGTATCTTCTTTACCAGTTGAAGGCCGAATGCTTTCTGTGGCAGATGTTTTACCTTTTCCAGATGCCACAGCCACTGTGCAATCTCTGTATTCAGAAATTGAGTTTAGTGGTTATGAGAACTCAATGGAATTGTGTGAAAGGGCATCTGGGAAGCTTTGGGCAAGGGGAGACCTCTCAACCCAACATATTTTACCAAGGAGGAGGATTGTCATATTTAGCACAATGGGCATGATGGAGATTGTTTTTAACAGGCCACTGGACATTCTAAGGCGGCTGTTAGAGTCGAACTCTCCAAGATCAGTTTTAGAAGATTTCTTCAATCGTTTTGGTGCTGGTGAGGCAGCTGCGATGTGCCTTATGCTAGCTGCAAGAATAGCACATTCTGAAAACCTTATTAGCAATGTTATTTCTGAGAAGGCCGCTGAAGCTTTTGAGGATCCACGAGTTGTTGGGATGCCACAACTTGAAGGCAACAGTGCATTATCAAATACAACAACTGCTGCTGGTGGATTTAGCATGGGCCAGGTTGTTCAGGAAGCTGAGCCTGTTTTTTCAGGTGCACATGAAGGGCTCTGTTTGTGTTCATCTAGATTGCTTTTCCCTCTATGGGAACTTCCTGTGGTGGTTGTAAAAGGCGGTCCTTCAGGCACCTTATCTGAAAATGGAGTAGTTGTATGCAGACTCTCTGTTGGGGCCATGCAAGTCCTTGAACAAAAAATCCGTTCTTTAGAGAAATTCTTAAGATCTAGAAGGAACCAGAGGAGGGGGCTTTATGGCTGTGTAGCAGGTCTAGGAGATGTGAGTGGTTCCATTCTATATGGCAGTGGTTCAGCATTAGGTGTTGGTGACCGAAATATGGTAAGAAACTTATTTGGTTCATATTCCAGAAATGTGGAGTCCAATGGGAGCGGAAAAACTAATAAAAGGCAAAGGTTGCCATATAGTCCTGCAGAATTAGCTGCCATGGAGGTGAGGGCAATGGAATGCATTAGGCAGTTACTTCTTAGATCCAGTGAAGCCCTGTTTTTGCTTCAACTTCTTTCGCAACATCATGTTACTCGGTTGATTCAGGGATTTGATGCTAACCTTCAACAAGCATTAGTTCAGTTAACATTTCATCAACTAGTTTGTTCTGAGGATGGTGATCATCTTGCGACAAGACTTATATCTTCTCTAATGGAGTATTATACTGGTCCAGATGGCAGGGGGACTGTAGATGATATTAGTAGGAGATTAAGAGAGGGTTGTCCAAGCTACTATAAGGAGTCTGATTACAAGTTCTTCTTAGCTGTGGAAGCTCTGGAGAGAGCAGCTGTGACTATAGATGCCGAGGAAAAGGAGAATCTTGCAAAGGAAGCATTTAATTCCTTAAGTAAAGTTCCAGAGTCTACAGACTTACGAACTGTTTGCAAACGTTTTGAGGATTTAAGATATTATGAAGCTGTAGTGCGACTACCTCTTCAAAAGGCACAGGCTCTCGACCCTGCAGGTGATGCTTATAATGATGAAATTGATGCAACCGTCAGGGAACAAGCACTTGCTCAGCGTGAACAGTGTTATGAGATAATTATCAGGGCTTTGCGGTCTCTGAAAGGTGACACCACACAGAGGGAATTTGGCACTCCCATCAGATCTGCTGCTTCAGAATCTGTTCTTGATCCAGCCTCAAGGAAACAATATATATGCCAAATTGTTCAGCTTGGTGTTCAATCCCCTGACAGAATTTTCCATGATTATCTTTACCAGGCTATGATTGATTTAGGTCTTGAGAATGAATTGTTAGAGTATGGAGGTCCTGATCTATTGCCCTTCTTGCAAAGTGCTGGACGTAGACACATACATGAGGTTCGTGCTGTGACTGCAACAACTTCTCCATTGGGTCAATCAGGAGCACCTATGACATCTAATGAAGTCAAGTACTATGAACTTTTGGCACGGTATTATGTCTTGAAGCGGCAACATATGCTTGCTGCTCATGCATTGCTAAGGCTAGCTGAAAGGCGTTCTATTGCTGGAGCTCCTAAACTGGAACAAAGGTGTCAACACCTAAGTAATGCAGTAATACAGGCAAAAAATGCAACTGATAGTGATGGGTTGGTAGGTTCTGGTCGGAGTTCCACTGATAGTGGATTCCTAGACTTGCTTGAAGGGAAGCTTGCTGTTCTTCAATTTCAGATAAAAGTCAAAGAGGAATTGGAGGCTATGGCTTTGAGGTCTGAGGTTTTACCTAGCATGTCTGATTCCGATGAAAATGGTTTAGTTCCCGAGGACAGCTCTGCTAATACTGATTTTGCAAATGCAACACGTGAGAAGGCCAAAGAGCTATCATCAGATGTAAAAAGCATAACACAGTTATATAATGAATACGCTATCCCCTTTGAGCTCTGGGAGATATGCCTTGAAATGCTGTACTTTGCCAATTATACCGGTGGTGCTGACAGCAACATCGTCAAAGAGATATGGGCTAGACTTATTGATCAAGCTATTTCAAGAGGTGGCATTGCTGAAGCTTGCTCAGTATTAAAGAGGGTCGGGCCCCGCATTTACCCGGGTGACGGGGCTGTTTTACCATTTGACATTATTTGTCTTCACCTAGAGAAGGCTGGACTGGAGAGGTTAAATTCAGGTGTTGAAATAGTTGGAGATGAAGATATTGCAAGGGCCCTTCTTGGTGCTTGCAAGGGTGCAGCTGAACCTGTATTGAACACATACGATCAACTTTTGTCAAGTGGGACTATTTTGTCTTCACCAAATCTTAGATTACGAATTCTGAGATCAGTCCTTGTGATACTTCGTGAGTGGGCCATGTCTGTATATTCACAGAGGGTGGCTACTGGTACTGCTGGTTCTCCCCTAACGTTTGGGGGAGGATTTTCATTTGAACGAAGAGGTGCTAGCCAAGGAGTTCGGGATAAGATCACAAGTTCAGCAAACAGGTATATGACTGAGGTACGGAGGTTAGCCCTTCCACAGAACCAAACTGAAGTTGTGTACCGAGGCTTTAAAGAGCTAGAAGAGTCCCTTATAAGTCCTCATTCATTTGATCGATTTTGA 4449 0.4414 MSWEEEIVMRDVTNAGLVVSDRIARELSSHLDLEESLEASRYATHPYSTNPREWPPSVEVANTWDLPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYSGEEQAICAVGLAKSKPGVFVEAIQYLLILATPVELTLVGVCCSGGADGSDPFAEVSLQPLPEYTVPSDGVTMTCVVCTDKGRIFLAGRDSHIYELIYSTGSGWQKRCRKICITAGLGSVISRWVIPNVFNFSTVDPIVEMVFDNERQILYARTEEMKLQAYVLGSNGDGPLKKVAEERNLVNQKDAHYGGRQSAGPRGSSRSPKPSIVSISPVSSLESKWLHLVAVLSDGRRMYLSTSPSSGSLTGFNINHHKPSCLKVVTTRPAPPWGVSGGHTLGAMALAGRPQNDDLSLKVEAAYYSAGTLILSDASPPNMPSILVLNRDSSTHSLPSGNLGTSTRSSRALRESVSSLPVEGRMLSVADVLPFPDATATVQSLYSEIEFSGYENSMELCERASGKLWARGDLSTQHILPRRRIVIFSTMGMMEIVFNRPLDILRRLLESNSPRSVLEDFFNRFGAGEAAAMCLMLAARIAHSENLISNVISEKAAEAFEDPRVVGMPQLEGNSALSNTTTAAGGFSMGQVVQEAEPVFSGAHEGLCLCSSRLLFPLWELPVVVVKGGPSGTLSENGVVVCRLSVGAMQVLEQKIRSLEKFLRSRRNQRRGLYGCVAGLGDVSGSILYGSGSALGVGDRNMVRNLFGSYSRNVESNGSGKTNKRQRLPYSPAELAAMEVRAMECIRQLLLRSSEALFLLQLLSQHHVTRLIQGFDANLQQALVQLTFHQLVCSEDGDHLATRLISSLMEYYTGPDGRGTVDDISRRLREGCPSYYKESDYKFFLAVEALERAAVTIDAEEKENLAKEAFNSLSKVPESTDLRTVCKRFEDLRYYEAVVRLPLQKAQALDPAGDAYNDEIDATVREQALAQREQCYEIIIRALRSLKGDTTQREFGTPIRSAASESVLDPASRKQYICQIVQLGVQSPDRIFHDYLYQAMIDLGLENELLEYGGPDLLPFLQSAGRRHIHEVRAVTATTSPLGQSGAPMTSNEVKYYELLARYYVLKRQHMLAAHALLRLAERRSIAGAPKLEQRCQHLSNAVIQAKNATDSDGLVGSGRSSTDSGFLDLLEGKLAVLQFQIKVKEELEAMALRSEVLPSMSDSDENGLVPEDSSANTDFANATREKAKELSSDVKSITQLYNEYAIPFELWEICLEMLYFANYTGGADSNIVKEIWARLIDQAISRGGIAEACSVLKRVGPRIYPGDGAVLPFDIICLHLEKAGLERLNSGVEIVGDEDIARALLGACKGAAEPVLNTYDQLLSSGTILSSPNLRLRILRSVLVILREWAMSVYSQRVATGTAGSPLTFGGGFSFERRGASQGVRDKITSSANRYMTEVRRLALPQNQTEVVYRGFKELEESLISPHSFDRF 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0982 1482 Gene3D - 892 1052 IPR042533 -
Lal16g0982 1482 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 2 1479 IPR004870 GO:0005643|GO:0006913|GO:0017056
Lal16g0982 1482 PANTHER BNAC05G49530D PROTEIN 2 1479 - -
Lal16g0982 1482 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 871 1289 IPR007187 -
Lal16g0982 1482 Gene3D - 1178 1413 IPR042538 -
Lal16g0982 1482 Coils Coil 698 718 - -
Lal16g0982 1482 MobiDBLite consensus disorder prediction 300 326 - -
Lal16g0982 1482 Gene3D - 531 881 - -
Lal16g0982 1482 Pfam Nup133 N terminal like 54 543 IPR014908 -
Lal16g0982 1482 Gene3D Nucleoporin, helical domain, central subdomain 1055 1152 IPR042537 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0982 Lal-Chr16 6531628 6543478 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0982 16 6531628 6543478 Lal16g0982 16 6531628 6543478 ECH
Lal16g0982 16 6531628 6543478 Lal23g0657 23 9291707 9302504 LSH