Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0972 ATGGCTTCCCTCTCTCTTCAACACCACACCCACCACTTCCTCTCTCGGGCCCTCCCTACCCAGCCCAAGCCCAAGCCCAACTTCTCCGTCCGTATGTCTCTCAAAGAAACCGGCCCCTCCATCGCCGTCGTCGGCGTCACCGGTGCCGTCGGCCAGGAGTTCCTCTCTGTCCTCTCCGACCGCGACTTCCCTTACCGCTCCATCAAAATGCTCGCCTCCAAGCGCTCCTCCGGCCGCCGCATCACCTTCGAGGACAACGACTACGTCGTCGAGGAACTCACGCCGGAGAGCTTTGCCGGCGTCGACATTGCACTGTTCAGCGCCGGCGGTTCAATCAGCAGGGAATTCGGCCCTATCGCTGTTGAACGAGGCACTATCGTTGTTGATAACAGTTCGGCGTTTCGTATGGATGAGAAGGTGCCATTGGTGATTCCAGAAGTGAACCCTGAAGCTATGGCGGATATTAAGGTTGGAATGGGGAAAGGGGCTCTTATTGCTAACCCCAATTGTTCCACCATTATTTGCTTAATGGCTGCTACTCCGCTTCATAGAAGGGCCAAGGTTTTGCGTATGGTAGTTAGTACATATCAGGCTGCTAGCGGTGCTGGTGCTGCTGCAATGGATGAGCTGGAGCTGCAAACTCGTGAGGTGTTGGAAGGAAAACCGCCAACTTGTAAAATATTTAACCAACAGTATGCTTTTAATATATTCTCACATAATGCATCTGTTCTTCCAAATGGATATAATGAAGAAGAAATGAAAATGGTCAAGGAGACGAGGAAAATATGGAATGACAAGGACGTTAAAGTAACTGCCACATGTATACGAGTTCCCGTCATGCGTGCTCATGCTGAGAGTGTGAATCTTCAATTTGAGAGCCCCCTTGATGAGGATACTGCAAGAGATATTTTGAAGAACGCTCCAGGCATAGTGGTTATTGATGACCGTGAATCCAATCATTTTCCTACACCATTAGAAGTGTCAAATAAGGATGATGTTGCTGTTGGCCGGATTCGCCAGGACTTGTCTCTGGATGGAAATCAAGGGTTGGACATATTTATTTGTGGGGATCAAATTCGTAAGGGAGCTGCACTTAATGCAATTCAGATTGCTGAGATGTTGCTATGA 1128 0.4929 MASLSLQHHTHHFLSRALPTQPKPKPNFSVRMSLKETGPSIAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSSGRRITFEDNDYVVEELTPESFAGVDIALFSAGGSISREFGPIAVERGTIVVDNSSAFRMDEKVPLVIPEVNPEAMADIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVLRMVVSTYQAASGAGAAAMDELELQTREVLEGKPPTCKIFNQQYAFNIFSHNASVLPNGYNEEEMKMVKETRKIWNDKDVKVTATCIRVPVMRAHAESVNLQFESPLDEDTARDILKNAPGIVVIDDRESNHFPTPLEVSNKDDVAVGRIRQDLSLDGNQGLDIFICGDQIRKGAALNAIQIAEMLL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0972 375 SMART Semialdhyde_dh_3 40 155 IPR000534 GO:0016620|GO:0051287
Lal16g0972 375 Gene3D - 41 374 - -
Lal16g0972 375 Pfam Semialdehyde dehydrogenase, dimerisation domain 181 361 IPR012280 GO:0008652|GO:0016620|GO:0046983
Lal16g0972 375 PANTHER BNAA09G26740D PROTEIN 32 375 - -
Lal16g0972 375 MobiDBLite consensus disorder prediction 1 28 - -
Lal16g0972 375 PIRSF ASA_dh 38 375 - -
Lal16g0972 375 Pfam Semialdehyde dehydrogenase, NAD binding domain 41 154 IPR000534 GO:0016620|GO:0051287
Lal16g0972 375 Gene3D Dihydrodipicolinate Reductase; domain 2 170 357 - -
Lal16g0972 375 PANTHER DEHYDROGENASE, PUTATIVE-RELATED 32 375 - -
Lal16g0972 375 TIGRFAM asd_B: aspartate-semialdehyde dehydrogenase 40 374 IPR005986 GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661
Lal16g0972 375 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 169 362 - -
Lal16g0972 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 40 197 IPR036291 -
Lal16g0972 375 Hamap Aspartate-semialdehyde dehydrogenase [asd]. 38 375 IPR012080 GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0972 Lal-Chr16 6460987 6464287 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0972 16 6460987 6464287 Lal15g0950 15 7376061 7379564 LSH
Lal16g0972 16 6460987 6464287 Lal23g0670 23 9378973 9383483 LSH